G1706224


Basic Information

Item Value
gene id G1706224
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 10291103 ~ 10292017 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1954018
TCTGAATGATAGTAGAGCCCTGTCAGTAGAGTTAACACTGAACAACATACCTCTGAATGATAGTAGAGCCCTGTCAGTAGAGTTAACACTGAACAACATACCTCTGAATGGCAGTAGAGCCCTGTCAGTAGAGTTAACACTGAACAACATACCTCTGTCTGAATGATAGTAGAGCCCTGTCAGTAGAGTTAACACTGAACAACACACCTCTGTCTGAATGATAGTAGAGCCCTGTCAGTAGAGTTAACACTGAACAACATACCTCTGTCTGAATGATAGTAGAGCGCTGTTCCTTAGCGGTCAGTGACTCCTTGAGGACCTCGATGTGCTGTTTGCTGTCTGAGAACTGGTTGGTGAGAGTCTCCAGCTTGGTCCTCATCCCCATCAGCTCTGTCTCCTTCCTGCTGAGGTCCTGCTTTACCTGGTCAATCTGAGCACAGAGATAGAATCAATCAGCCCTCTAGGTTAGTATTGAGTATCTTCATTCATACATGATCAGCCCTATAGGTTAGCATTGAGTATCTCCATTCATACATGATCAGCCCTATAGGTTAGTATTGAGTATCTTCAGTCATACATGATCAGCCCTATAGGTTAGTATTGAGTATCTCCATTCATACATGATCAGCCCTCTAGGTTAGTATTGAGTCTGTCTGTCATAGGATATTGTATCATCTATAACTGGGAATTTATtatggggttagttaatacctccctactgtagctgatggggttagttatta

Function

NR:

description
PREDICTED: ELKS/Rab6-interacting/CAST family member 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1954018 True 743 lncRNA 0.43 2 10291103 10292017

Neighbor

gene id symbol gene type direction distance location
LOC118942996 NA coding upstream 193079 10070476 ~ 10098024 (+)
LOC118942870 NA coding upstream 309966 9980795 ~ 9981137 (+)
LOC110516560 LOC106576660 coding upstream 420514 9868402 ~ 9870589 (+)
LOC118942868 mkrn1 coding upstream 426360 9824762 ~ 9864743 (+)
LOC118942867 NA coding upstream 520955 9769444 ~ 9771487 (+)
LOC110510583 LOC106597972 coding downstream 29175 10321192 ~ 10323104 (+)
LOC110490805 LOC106591178 coding downstream 230929 10522946 ~ 10699071 (+)
LOC118942873 NA coding downstream 308971 10600988 ~ 10602420 (+)
LOC110514895 LOC106576365 coding downstream 438533 10730550 ~ 10791811 (+)
LOC110510616 NA coding downstream 502752 10794769 ~ 10796991 (+)
G1706198 NA non-coding upstream 58248 10231348 ~ 10232855 (+)
G1706139 NA non-coding upstream 164326 10088310 ~ 10126777 (+)
G1706151 NA non-coding upstream 169544 10121250 ~ 10121559 (+)
G1706143 NA non-coding upstream 186707 10102201 ~ 10104396 (+)
G1706136 NA non-coding upstream 222397 10068130 ~ 10068706 (+)
G1706252 NA non-coding downstream 95073 10387090 ~ 10387614 (+)
G1706261 NA non-coding downstream 114057 10406074 ~ 10407348 (+)
G1706277 NA non-coding downstream 155484 10447501 ~ 10450684 (+)
G1706278 NA non-coding downstream 158843 10450860 ~ 10458562 (+)
G1706302 NA non-coding downstream 223864 10515881 ~ 10517090 (+)
G1706152 NA other upstream 155719 10134388 ~ 10135384 (+)
G1706090 NA other upstream 373084 9915713 ~ 9918019 (+)
G1706013 NA other upstream 537630 9748185 ~ 9753473 (+)
G1705920 NA other upstream 630963 9659331 ~ 9660140 (+)
G1705918 NA other upstream 635385 9655298 ~ 9655718 (+)
LOC110531908 LOC106594049 other downstream 817411 11103180 ~ 11138813 (+)
G1706652 NA other downstream 978712 11270729 ~ 11272473 (+)
G1706711 NA other downstream 1106023 11398040 ~ 11399288 (+)
G1707493 LOC106609754 other downstream 1276412 11568429 ~ 11568956 (+)
G1707462 NA other downstream 1361884 11653901 ~ 11654623 (+)

Expression


Co-expression Network