G1706278


Basic Information

Item Value
gene id G1706278
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 10450860 ~ 10458562 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1954151
gctgctgaaaaatgagctcctgtatatattgagatttaaatggttttttagagtgaagtacaaagacaatacaagcaacaaaccaaaaagacaggattttgaaaaagtaactatttttcataaaattaaacagttatcttagctagctgaattgtttacatgttgctaagcagttgctagggactctcctggaagaagctagctagcttacaaagaataacaaaaaaaatatctagttaacagaagaaaggaagacaaaataaggacaaaataaggacagaagaaaaaggaaaagaaaaaaggacaacaaagtgaaacagtcctctgaagaaacaagagagcattatacaagaaacagcacttctattgcaacattgtagccaacatcaccagcgttgctatggaaattgtttacccaccagacatccaaacagagaaagc
>TU1954150
ccggagttccaaattgagcagctgctgaaaaatgagctcctgtatatattgagatttaaatggttttttagagtgaagtacaaagacaatacaagcaacaaaccaaaaagacaggattttgaaaaagtaactatttttcataaaattaaacagttatcttagctagctgaattgtttacatgttgctaagcagttgctagggactctcctggaagaagctagctagcttacaaagaataacaaaaaaaatatctagttaacagaagaaaggaagacaaaataaggacaaaataaggacagaagaaaaaggaaaagaaaaaaggacaacaaagtgaaacagtcctctgaagaaacaagagagcattatacaagaaacagcacttctattgcaacattgtagccaacatcaccagcgttgctatggaaattgtttacccaccagacatccaaacagagaaagc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1954151 False 441 lncRNA 0.34 2 10450860 10458562
TU1954150 True 461 lncRNA 0.35 2 10458066 10458562

Neighbor

gene id symbol gene type direction distance location
LOC110510583 LOC106597972 coding upstream 127756 10321192 ~ 10323104 (+)
LOC118942996 NA coding upstream 352836 10070476 ~ 10098024 (+)
LOC118942870 NA coding upstream 469723 9980795 ~ 9981137 (+)
LOC110516560 LOC106576660 coding upstream 580271 9868402 ~ 9870589 (+)
LOC118942868 mkrn1 coding upstream 586117 9824762 ~ 9864743 (+)
LOC110490805 LOC106591178 coding downstream 64384 10522946 ~ 10699071 (+)
LOC118942873 NA coding downstream 142426 10600988 ~ 10602420 (+)
LOC110514895 LOC106576365 coding downstream 271988 10730550 ~ 10791811 (+)
LOC110510616 NA coding downstream 336207 10794769 ~ 10796991 (+)
LOC118942874 LOC106609820 coding downstream 442287 10900849 ~ 10902569 (+)
G1706277 NA non-coding upstream 176 10447501 ~ 10450684 (+)
G1706261 NA non-coding upstream 43512 10406074 ~ 10407348 (+)
G1706252 NA non-coding upstream 63246 10387090 ~ 10387614 (+)
G1706224 NA non-coding upstream 158843 10291103 ~ 10292017 (+)
G1706198 NA non-coding upstream 218005 10231348 ~ 10232855 (+)
G1706302 NA non-coding downstream 57319 10515881 ~ 10517090 (+)
G1706346 NA non-coding downstream 127087 10585649 ~ 10587832 (+)
G1706349 NA non-coding downstream 130543 10589105 ~ 10589692 (+)
G1706391 NA non-coding downstream 220311 10678873 ~ 10679284 (+)
G1706392 NA non-coding downstream 221514 10680076 ~ 10680817 (+)
G1706152 NA other upstream 315476 10134388 ~ 10135384 (+)
G1706090 NA other upstream 532841 9915713 ~ 9918019 (+)
G1706013 NA other upstream 697387 9748185 ~ 9753473 (+)
G1705920 NA other upstream 790720 9659331 ~ 9660140 (+)
G1705918 NA other upstream 795142 9655298 ~ 9655718 (+)
LOC110531908 LOC106594049 other downstream 650866 11103180 ~ 11138813 (+)
G1706652 NA other downstream 812167 11270729 ~ 11272473 (+)
G1706711 NA other downstream 939478 11398040 ~ 11399288 (+)
G1707493 LOC106609754 other downstream 1109867 11568429 ~ 11568956 (+)
G1707462 NA other downstream 1195339 11653901 ~ 11654623 (+)

Expression


Co-expression Network