G1706307


Basic Information

Item Value
gene id G1706307
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 10699791 ~ 10701318 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1954185
agtagtgcactaaatagagaatagggtaccattttggaCGTAGTCTTTACAGTAGTAGTTGTGACTGGGCCCTATGCCATTTAAGGTGGGTAAAGTGAAAGTGGAGTTGAGGTAGAAGCCAGGGCTAGTggaggcagaagaggagaggtcaGGGGACTCTCTATCTCCAACACatggcagtagtactgtacacTGTGCTGCTGGGTTGAGGTAGAAGCCAGGGCTAGTggaggcagaagaggagaggtcaGAGGACTCTCTATCTCCAACACATGGCAGTAGTACTGTACGCTGTGCTGCTGGGTTTGACCAACAAGTGACTTCCTCATCACCAATGCTGGTGGTTCAAGCCCAGTTATTTCATCATCTGCTTAATGCTGCCCCAGTCTCTTTAATGAAACCACCTGTGGCTTTTAGTGCAGGTTTGTAGCTTGTTCTAAAGTAGCAGACAGTCTCACCACTCACAATGCAGACAAATAAATGTTTGGTTCCATCATGATTAGATTTCTTTGACATGGATGTTTTAGTTTTTTGGTTGATGTCCTTCTGGTCTTTTTGGAAACCTTACAAAATGTTGTAATGATAGATGAACAGTGTCCGTGTctttctcgttacctgacagtgttgtagacagtaaAACTGGTCCAATCTGTGTACAACAGAGTAGTTCATTAAGCCCCATATCCTTTTCATAGCAACTGTACAAAACCATTACCTGGGGTCAAACATGTTTAAAGCCGTAGAAAAGTGATTTTTAATAAACACTCGTCACCTTAACTACTGATTAGCTTACAGGGACTGCTAGATCTATCGCCTTCTGCTTAGCGCTTCAGTCGTCTCTCCTCGCTGTAAACATGTCTGCTACGGGA
>TU1954186
agtagtgcactaaatagagaatagggtaccattttggaCGTAGTCTTTACAGTAGTAGTTGTGACTGGGCCCTATGCCATTTAAGGTGGGTAAAGTGAAAGTGGAGTTGAGGTAGAAGCCAGGGCTAGTggaggcagaagaggagaggtcaGGGGACTCTCTATCTCCAACACatggcagtagtactgtacacTGTGCTGCTGGGTTGAGGTAGAAGCCAGGGCTAGTggaggcagaagaggagaggtcaGGGGACTCTCTATCTCCAACAcatggcagtagtactgtatgcTGTGCTGCTGGGTTGAGGTAGAAGCCAGGGCTAGTggaggcagaagaggagaggtcaGGGGACTCTCTATCTCCAACAcatggcagtagtactgtatgcTGTGCTGCTGGGTTGAGGTAGAAGCCAGGGCTAGTggaggcagaagaggagaggtcaAGGGGACTCTCTATCTCCAACACATGGCAGTAGTACTGTACGCTGTGCTGCTGGGTTGAGGTAGAAGACAGGGCTAGTggaggcagaagaggagaggtcaGAGGACTCTCTATCTCCAACACATGGCAGTAGTACTGTACGCTGTGCTGCTGGGTTTGACCAACAAGTGACTTCCTCATCACCAATGCTGGTGGTTCAAGCCCAGTTATTTCATCATCTGCTTAATGCTGCCCCAGTCTCTTTAATGAAACCACCTGTGGCTTTTAGTGCAGGTTTGTAGCTTGTTCTAAAGTAGCAGACAGTCTCACCACTCACAATGCAGACAAATAAATGTTTGGTTCCATCATGATTAGATTTCTTTGACATGGATGTTTTAGTTTTTTGGTTGATGTCCTTCTGGTCTTTTTGGAAACCTTACAAAATGTTGTAATGATAGATGAACAGTGTCCGTGTctttctcgttacctgacagtgttgtagacagtaaAACTGGTCCAATCTGTGTACAACAGAGTAGTTCATTAAGCCCCATATCCTTTTCATAGCAACTGTACAAAACCATTACCTGGGGTCAAACATGTTTAAAGCCGTAGAAAAGTGATTTTTAATAAACACTCGTCACCTTAACTACTGATTAGCTTACAGGGACTGCTAGATCTATCGCCTTCTGCTTAGCGCTTCAGTCGTCTCTCCTCGCTGTAAACATGTCTGCTACGGGA
>TU1954188
agtagtgcactaaatagagaatagggtaccattttggaCGTAGTCTTTACAGTAGTAGTTGTGACTGGGCCCTATGCCATTTAAGGTGGGTAAAGTGAAAGTGGAGTTGAGGTAGAAGCCAGGGCTAGTggaggcagaagaggagaggtcaGGGGACTCTCTATCTCCAACACatggcagtagtactgtacacTGTGCTGCTGGGTTGAGGTAGAAGCCAGGGCTAGTggaggcagaagaggagaggtcAGGGGACTCTCTATCTCCAACACATGGCAGTAGTACTGTACGCTGTGCTGCTGGGTTGAGGTAGAAGACAGGGCTAGTggaggcagaagaggagaggtcaGAGGACTCTCTATCTCCAACACATGGCAGTAGTACTGTACGCTGTGCTGCTGGGTTTGACCAACAAGTGACTTCCTCATCACCAATGCTGGTGGTTCAAGCCCAGTTATTTCATCATCTGCTTAATGCTGCCCCAGTCTCTTTAATGAAACCACCTGTGGCTTTTAGTGCAGGTTTGTAGCTTGTTCTAAAGTAGCAGACAGTCTCACCACTCACAATGCAGACAAATAAATGTTTGGTTCCATCATGATTAGATTTCTTTGACATGGATGTTTTAGTTTTTTGGTTGATGTCCTTCTGGTCTTTTTGGAAACCTTACAAAATGTTGTAATGATAGATGAACAGTGTCCGTGTctttctcgttacctgacagtgttgtagacagtaaAACTGGTCCAATCTGTGTACAACAGAGTAGTTCATTAAGCCCCATATCCTTTTCATAGCAACTGTACAAAACCATTACCTGGGGTCAAACATGTTTAAAGCCGTAGAAAAGTGATTTTTAATAAACACTCGTCACCTTAACTACTGATTAGCTTACAGGGACTGCTAGATCTATCGCCTTCTGCTTAGCGCTTCAGTCGTCTCTCCTCGCTGTAAACATGTCTGCTACGGGAAATCACTTGAAAACAGATGGTAGATTCTCAATCATTTTGTATTTTCAGAGTGACTATGTTGTATCCTGGATATTTAAAACCGTTAAAAACAGTTGGTTTTCTTTGTAAAACGTTTTGTGGATTGAACTTTTCGTTCTTACTGGAGGCCCTcagtacagtacttac
>TU1954189
agtagtgcactaaatagagaatagggtaccattttggaCGTAGTCTTTACAGTAGTAGTTGTGACTGGGCCCTATGCCATTTAAGGTGGGTAAAGTGAAAGTGGAGTTGAGGTAGAAGCCAGGGCTAGTggaggcagaagaggagaggtcaGGGGACTCTCTATCTCCAACACatggcagtagtactgtacacTGTGCTGCTGGGTTGAGGTAGAAGCCAGGGCTAGTggaggcagaagaggagaggtcaGAGGACTCTCTATCTCCAACACATGGCAGTAGTACTGTACGCTGTGCTGCTGGGTTTGACCAACAAGTGACTTCCTCATCACCAATGCTGGTGGTTCAAGCCCAGTTATTTCATCATCTGCTTAATGCTGCCCCAGTCTCTTTAATGAAACCACCTGTGGCTTTTAGTGCAGGTTTGTAGCTTGTTCTAAAGTAGCAGACAGTCTCACCACTCACAATGCAGACAAATAAATGTTTGGTTCCATCATGATTAGATTTCTTTGACATGGATGTTTTAGTTTTTTGGTTGATGTCCTTCTGGTCTTTTTGGAAACCTTACAAAATGTTGTAATGATAGATGAACAGTGTCCGTGTctttctcgttacctgacagtgttgtagacagtaaAACTGGTCCAATCTGTGTACAACAGAGTAGTTCATTAAGCCCCATATCCTTTTCATAGCAACTGTACAAAACCATTACCTGGGGTCAAACATGTTTAAAGCCGTAGAAAAGTGATTTTTAATAAACACTCGTCACCTTAACTACTGATTAGCTTACAGGGACTGCTAGATCTATCGCCTTCTGCTTAGCGCTTCAGTCGTCTCTCCTCGCTGTAAACATGTCTGCTACGGGA

Function

NR:

description
uncharacterized protein LOC110490678

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1954185 False 869 lncRNA 0.44 2 10699791 10701153
TU1954186 False 1167 lncRNA 0.47 2 10699791 10701153
TU1954188 False 1133 lncRNA 0.44 3 10699791 10701318
TU1954189 True 869 lncRNA 0.44 3 10699791 10701153

Neighbor

gene id symbol gene type direction distance location
LOC110490805 LOC106591178 coding upstream 1177 10522946 ~ 10699071 (+)
LOC118942873 NA coding upstream 97371 10600988 ~ 10602420 (+)
LOC110510583 LOC106597972 coding upstream 376687 10321192 ~ 10323104 (+)
LOC118942996 NA coding upstream 601767 10070476 ~ 10098024 (+)
LOC118942870 NA coding upstream 718654 9980795 ~ 9981137 (+)
LOC110514895 LOC106576365 coding downstream 29232 10730550 ~ 10791811 (+)
LOC110510616 NA coding downstream 93451 10794769 ~ 10796991 (+)
LOC118942874 LOC106609820 coding downstream 199531 10900849 ~ 10902569 (+)
LOC110531908 LOC106594049 coding downstream 401862 11103180 ~ 11138813 (+)
LOC118942875 NA coding downstream 410894 11112212 ~ 11112675 (+)
G1706392 NA non-coding upstream 18974 10680076 ~ 10680817 (+)
G1706391 NA non-coding upstream 20507 10678873 ~ 10679284 (+)
G1706349 NA non-coding upstream 110099 10589105 ~ 10589692 (+)
G1706346 NA non-coding upstream 111959 10585649 ~ 10587832 (+)
G1706426 NA non-coding downstream 59248 10760566 ~ 10760967 (+)
G1706428 NA non-coding downstream 61506 10762824 ~ 10763875 (+)
G1706429 NA non-coding downstream 65094 10766412 ~ 10766700 (+)
G1706436 NA non-coding downstream 81742 10783060 ~ 10785280 (+)
G1706437 NA non-coding downstream 86324 10787642 ~ 10788399 (+)
G1706152 NA other upstream 564407 10134388 ~ 10135384 (+)
G1706090 NA other upstream 781772 9915713 ~ 9918019 (+)
G1706013 NA other upstream 946318 9748185 ~ 9753473 (+)
G1705920 NA other upstream 1039651 9659331 ~ 9660140 (+)
G1705918 NA other upstream 1044073 9655298 ~ 9655718 (+)
G1706652 NA other downstream 569411 11270729 ~ 11272473 (+)
G1706711 NA other downstream 696722 11398040 ~ 11399288 (+)
G1707493 LOC106609754 other downstream 867111 11568429 ~ 11568956 (+)
G1707462 NA other downstream 952583 11653901 ~ 11654623 (+)

Expression


Co-expression Network