G1706436


Basic Information

Item Value
gene id G1706436
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 10783060 ~ 10785280 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1954354
CAgatctgctgtctcctctctgccagccagaCGCCAGGAGCCAGGGACAAACTGGAGCACACAGGagtagagtagtagagagtagatAGTAGAGTAGAAAGAGAAACcagagagatggataaagagactgagagatggacagagaaagagactgagggataaacagagcgagagacaggaaGTAAGGGTGATAGATACAAATAACCTATACTAGGAGACAGAGGTTTAATGGAGAACACAGGGAAGGATAGAAAGACTCCCTCATTTGCAgcagaaatagaaagagagcagagaacaggaccaagggagaggagagaacagagaacaggaccaagagaacagagaacaggaccaagagagaggagagaacagagaacaggaccaacagaacagagaacatgacaaaaagagaggagagaacaggaccaagagaacagagaacaggaccaagagagaggaaagaatagaggacaggaccaagagagaggagagaacagagaacaggaccaagagagaggagagaacaggaccaagagaacagagaacaggaccaagagagaggagagaacaggaccaagagaacagagaacaggaccaagagagaagagagaacaggaccaagagaacagagaacaggaccaagatagaggagagaacaggaccaagagaacagagaacaggaccaagagagaacagagaacaggaccaagagagaggagagaacagagaacaggaccaagagagaggagagaacagagaacaggacggagagacaggagagaacagagaataggaccaagagagaggagagaacagagaacaggaccaagagagaggagagaacagagaacaggaccaagagagaggagagaataggaccaagagaacagagaacaggaccaagagagaggagagaacaggaccaagagaacagagaacaggaccaagagagaggagagaacaggaccaagagagaggagagaacaggaccaagagagaggagagaacaggaccaagatagaggagagaacaggaccaagatagaggagagaacaggac
>TU1954356
CAgatctgctgtctcctctctgccagccagaCGCCAGGAGCCAGGGACAAACTGGAGCACACAGGagtagagtagtagagagtagatAGTAGAGTAGAAAGAGAAACcagagagatggataaagagactgagagatggacagagaaagagactgagggataaacagagcgagagacaggaaGTAAGGGTGATAGATACAAATAACCTATACTAGGAGACAGAGGTTTAATGGAGAACACAGGGAAGGATAGAAAGACTCCCTCATTTGCAgcagaaatagaaagagagcagagaacaggaccaagggagaggagagaacagagaacaggaccaagagaacagagaacaggaccaagagagaggagagaacagagaacaggaccaacagaacagagaacatgacaaaaagagaggagagaacaggaccaagagaacagagaacaggaccaagagagaggaaagaatagaggacaggaccaagagagaggagagaacagagaacaggaccaagagagaggagagaacaggaccaagagaacagagaacaggaccaagagagaggagagaacaggaccaagagaacagagaacaggaccaagagagaagagagaacaggaccaagagaacagagaacaggaccaagatagaggagagaacaggaccaagagaacagagaacaggaccaagagagaacagagaacaggaccaagagagaggagagaacagagaacaggaccaagagagaggagagaacagagaacaggacggagagacaggagagaacagagaataggaccaagagagaggagagaacagagaacaggacggagagacaggagagaacagagaataggaccaagagagaggagagaacagagaacaggaccaagagagaggagagaacagagaacaggaccaagagagaggagagaataggaccaagagaacagagaacaggaccaagagagaggagagaacaggaccaagagaacagagaacaggaccaagagagaggagagaacaggaccaagagagaggagagaacaggaccaagagagaggagagaacaggaccaagatagaggagagaacaggaccaagatagaggagagaacaggaccaagatagaggagagaacaggaccaagagaacagagaacaggacc
>TU1954358
CAgatctgctgtctcctctctgccagccagaCGCCAGGAGCCAGGGACAAACTGGAGCACACAGGagtagagtagtagagagtagatAGTAGAGTAGAAAGAGAAACcagagagatggataaagagactgagagatggacagagaaagagactgagggataaacagagcgagagacaggaaGTAAGGGTGATAGATACAAATAACCTATACTAGGAGACAGAGGTTTAATGGAGAACACAGGGAAGGATAGAAAGACTCCCTCATTTGCAgcagaaatagaaagagagcagagaacaggaccaagggagaggagagaacagagaacaggaccaagagaacagagaacaggaccaagagagaggagagaacagagaacaggaccaacagaacagagaacatgacaaaaagagaggagagaacaggaccaagagaacagagaacaggaccaagagagaggaaagaatagaggacaggaccaagagagaggagagaacagagaacaggaccaagagagaggagagaacaggaccaagagaacagagaacaggaccaagagagaggagagaacaggacccagagaacaggaccaagagaacatagaacaggaccaagagagagga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1954354 False 1059 lncRNA 0.48 2 10783060 10784264
TU1954356 False 1164 lncRNA 0.48 3 10783060 10785280
TU1954358 True 621 lncRNA 0.48 2 10783060 10784605

Neighbor

gene id symbol gene type direction distance location
LOC110490805 LOC106591178 coding upstream 84446 10522946 ~ 10699071 (+)
LOC118942873 NA coding upstream 180640 10600988 ~ 10602420 (+)
LOC110510583 LOC106597972 coding upstream 459956 10321192 ~ 10323104 (+)
LOC118942996 NA coding upstream 685036 10070476 ~ 10098024 (+)
LOC118942870 NA coding upstream 801923 9980795 ~ 9981137 (+)
LOC110510616 NA coding downstream 9489 10794769 ~ 10796991 (+)
LOC118942874 LOC106609820 coding downstream 115569 10900849 ~ 10902569 (+)
LOC110531908 LOC106594049 coding downstream 317900 11103180 ~ 11138813 (+)
LOC118942875 NA coding downstream 326932 11112212 ~ 11112675 (+)
LOC118942876 fgl2 coding downstream 409265 11194545 ~ 11200949 (+)
G1706429 NA non-coding upstream 16360 10766412 ~ 10766700 (+)
G1706428 NA non-coding upstream 19185 10762824 ~ 10763875 (+)
G1706426 NA non-coding upstream 22093 10760566 ~ 10760967 (+)
G1706307 NA non-coding upstream 81742 10699791 ~ 10701318 (+)
G1706437 NA non-coding downstream 2362 10787642 ~ 10788399 (+)
G1706404 NA non-coding downstream 6826 10792106 ~ 10793113 (+)
G1706443 NA non-coding downstream 27489 10812769 ~ 10813262 (+)
G1706447 NA non-coding downstream 31003 10816283 ~ 10817733 (+)
G1706491 NA non-coding downstream 112738 10898018 ~ 10899271 (+)
G1706152 NA other upstream 647676 10134388 ~ 10135384 (+)
G1706090 NA other upstream 865041 9915713 ~ 9918019 (+)
G1706013 NA other upstream 1029587 9748185 ~ 9753473 (+)
G1705920 NA other upstream 1122920 9659331 ~ 9660140 (+)
G1705918 NA other upstream 1127342 9655298 ~ 9655718 (+)
G1706652 NA other downstream 485449 11270729 ~ 11272473 (+)
G1706711 NA other downstream 612760 11398040 ~ 11399288 (+)
G1707493 LOC106609754 other downstream 783149 11568429 ~ 11568956 (+)
G1707462 NA other downstream 868621 11653901 ~ 11654623 (+)

Expression


Co-expression Network