G1706454


Basic Information

Item Value
gene id G1706454
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 10903855 ~ 10905995 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1954387
ACTCGTAACGTTAACCTTTATTAAGAGCTCCATATTTATGTAGAAATCACACTACAAGTTTTTCTCCTTACAAAAAGTTATTTACACTACAGTGCTGACAATTAAAATCGAACAGAAAATTATGAAAACTAAAAAGCTTCCTTGATATAAATAAGCCTCTGAGGGGGAACAAAAAAAAGCCTGGAGTAAATCCTTTAAAATAATGTCTCATCAtcttacaaaaaatatatatatgttaatGTCAGCTCTAATAATAATCCATCTATAACCTAAAACTAAAATATATTATTTAAGAACCTGTATGTTTGTCAGACCTGCAGAGTACCAGTGCTTCTGGCCCTAAGTGCTTTGACAGTTCACAGATATTAGCCTGagtcccagatcagtttatgcGTTCTTGCCAAGCCAACTCCTACTGTACGGTCAACAAtgagacaagacaatacaaactgatctgggaccaggctacacaGTTATGGACAGGCACTGAGGAATGTTACATTTGCAATGTATTCATTCGGTAACAGAACAGAGCAAGTGTGCATCCTAAAGGGTACCCTATgtccaatatagtgcactacttttgatcagatctctctcctatgggccctggtcacaaAGTAgatccctatatagggaatagggcaccatttagGATGCAAACCCAACAGAGCTTTACGTGTCCCTTAGAATACATCACACACCGTGCTGATATCATGGTTTAAAGTCTGTCTTCTCCTTCCTTTAGATGGGATTAAAACAGAACCCCGAAGAGCCATTTTAAAACACTATGTACAAAGATCAGTAGAAACAGTCTTTCTGGTGCTGCTCATGCAGGTGGTGtttaaaggagagggaggagcggTGCGGGGGGCCAGGAGGCCGTGTTTCCGGGGGGGTGACTGGGGCCTTTGTGTAAAGAGAAGTGTCTTTGTCCTGGGGTTTGTCCGGTCTGGGCTGGGGTTGGGCCCGGACCTGGGGTGTAGGGGTCCTGCTCTCTGTGTGGCTGGAGGCCAGGCTTGAAGAAGATAGAAGGGGTGCAGAGGAGGGCGTCAAAAAGGGGATAGGGGTGTGGGTAAGGACAGGGGTATGGGTAAGGGTATGGGTAAGGGTGTGGGTAAGGATAGGGGTGTGGGTAAGGATAGGGATATGGGTAGGGGTGTGGGTAAGGATAGGGGTGTGGTTAAGGACAGGGGTGTGGGTATGGGTAGGGGTATGGGTAGGGGTGTGGGtaagggtaggggtaggggtgtGGGTAAGGATAGGGATATGGGTAGGGGTGTGGGTAAGGACAGGGGTGTGGCAGGGTTTGCgtgagggagagggacagggggtacGAGTGGAAGCCGGGCTGGGTTTGAAGGGGGGAGAGGGACTGGGGGTACGAGTGGAAGCCGGGCTGGGTTTGAAGGGGGGAGAGGGACTGGGGGTACGAGTGGAAGCCGGGCTGGGTTTGAAGGGGGGAGAGTGTGTAGAAGTGGGACTAGATTTGGGAGAGGGGGTACAAGAGGATGACGGACTGGGTTTGGGAGAGGATgggggggtggaggtgggggagGGTTTGAGTGAGGAAGACAAGGAAGAGTGTGTGGTAGTGGTTTGATATAATTctgagtgatggtggtggtggtagtagtggggatgatggtgatgtgattTGGGCTTGGTGTCCTGGAAAGAGGATTTGGAGGGAGTTAGGGGGGTGATGGGAGTTGGTAGGGGGGCGATGGGTGAGGTGACAGAGGGCTTGGGCAGCCTTATATCCGCAGGTTGAGGTTCCACTTTGACCTCCGGGTGGgcagtgtctctgtctgtgggGGGTTTGGGGTCCGTGAGAGGAGCTGTGGTCCCTCCCATCAAGGCATCCCCAAACTGCTCCTGTTTGACTCGTAGCGTCGACACGtccaccttcctctcctcctcggCCGGAGGCTCTTGGTGGTATTGTTTTAAGCGGATGTGCCATGCCAGGCTGCAGACAGCAGAGACCGTCTTGAACTGATGAACCACACTACGAGGGATGTAGTAGATGTCGTTGTCGTACAGCTGGATACGGGCGTAGCGGATCCCCTCGCGTCTCAGCTGGTTCAGCTTAGCGTCGTCCACCCACT

Function

NR:

description
round spermatid basic protein 1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1954387 True 2111 lncRNA 0.51 2 10903855 10905995

Neighbor

gene id symbol gene type direction distance location
LOC118942874 LOC106609820 coding upstream 1286 10900849 ~ 10902569 (+)
LOC110510616 NA coding upstream 106864 10794769 ~ 10796991 (+)
LOC110514895 LOC106576365 coding upstream 112044 10730550 ~ 10791811 (+)
LOC110490805 LOC106591178 coding upstream 205241 10522946 ~ 10699071 (+)
LOC118942873 NA coding upstream 301435 10600988 ~ 10602420 (+)
LOC110531908 LOC106594049 coding downstream 197185 11103180 ~ 11138813 (+)
LOC118942875 NA coding downstream 206217 11112212 ~ 11112675 (+)
LOC118942876 fgl2 coding downstream 288550 11194545 ~ 11200949 (+)
LOC110499797 LOC106596128 coding downstream 405195 11311190 ~ 11316722 (+)
LOC110499792 LOC106595912 coding downstream 435641 11341636 ~ 11354995 (+)
G1706491 NA non-coding upstream 4584 10898018 ~ 10899271 (+)
G1706447 NA non-coding upstream 86122 10816283 ~ 10817733 (+)
G1706443 NA non-coding upstream 90593 10812769 ~ 10813262 (+)
G1706404 NA non-coding upstream 110742 10792106 ~ 10793113 (+)
G1706437 NA non-coding upstream 115456 10787642 ~ 10788399 (+)
G1706496 NA non-coding downstream 6018 10912013 ~ 10926463 (+)
G1706503 NA non-coding downstream 26748 10932743 ~ 10933825 (+)
G1706521 NA non-coding downstream 74005 10980000 ~ 10980452 (+)
G1706534 NA non-coding downstream 115203 11021198 ~ 11021877 (+)
G1706541 NA non-coding downstream 121803 11027798 ~ 11028422 (+)
G1706152 NA other upstream 768471 10134388 ~ 10135384 (+)
G1706090 NA other upstream 985836 9915713 ~ 9918019 (+)
G1706013 NA other upstream 1150382 9748185 ~ 9753473 (+)
G1705920 NA other upstream 1243715 9659331 ~ 9660140 (+)
G1705918 NA other upstream 1248137 9655298 ~ 9655718 (+)
G1706652 NA other downstream 364734 11270729 ~ 11272473 (+)
G1706711 NA other downstream 492045 11398040 ~ 11399288 (+)
G1707493 LOC106609754 other downstream 662434 11568429 ~ 11568956 (+)
G1707462 NA other downstream 747906 11653901 ~ 11654623 (+)

Expression


Co-expression Network