G1707283


Basic Information

Item Value
gene id G1707283
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11034309 ~ 11038811 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1955464
tataacattacattactgcaccacgtataacattacattacagcaccaccacgtataacattacagcaccaccacgtataacattacattacagcaccaccacgtataaaattacattactgcaccaccacgtataacattacagcaccaccgcgtataacattacagcaccaccacgtataacattacagcaccaccacgtataacattacagcaccaccacgtataacattacattacagtaccacCACATATAACATTACTGCACCACCacatataacattacattacagcaccaccacatataacattacagcaccaccacaTATAACATTACAacaccaccacgtataacattacagcaccaccacgtataacattacattacagcaccaccacgtataacattacattacagcaccaccacaTATAACATTACATCACAGCACCACCACGTACAACATTACTTTACAGCACCACCACGTgcaacattacattacagcaccaccacgtataacattacattacagcaccaccacgtataacattacattacagcaccaccacgtataacattacattacagcaccaccacgtataacattacagcaccaccacgtataa
>TU1955460
tataacattacattactgcaccacgtataacattacattactgcaccaccacgtataacattacattacagcaccaccacgtataacattacattacagcaccaccacgtataacattacattactgcaccaccacgtataacattacattacagcaccaccacatataacattacattacagcaccaccacgtataacactacagcaccaccacgtataacattacattacagcaccaccacgtataaaattacagcaccaccacgtataacattacattacagcaccaccacgtataacattacattactgcatcaccacgtataacattacagcaccaccgcgtataacattacagcaccaccacgtataacattacattactgcaccaccacgtataacattacattacag
>TU1955463
tataacattacattactgcaccacgtataacattacattactgcaccaccacgtataacattacattacagcaccaccacatataacattacattacagcaccaccacgtataacattacagcaccaccacgtataacattacattacagcaccaccacgtataa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1955464 False 624 lncRNA 0.40 3 11034309 11038811
TU1955460 False 415 lncRNA 0.39 3 11037957 11038811
TU1955463 True 165 lncRNA 0.38 2 11038490 11038811

Neighbor

gene id symbol gene type direction distance location
LOC110499727 LOC106609821 coding downstream 136954 10796557 ~ 10897355 (-)
LOC118942872 LOC106609835 coding downstream 543237 10406178 ~ 10491072 (-)
LOC110513868 LOC105024897 coding downstream 631563 10134288 ~ 10402746 (-)
LOC118942997 NA coding downstream 646733 10385482 ~ 10387576 (-)
LOC118942871 NA coding downstream 905056 10128070 ~ 10129253 (-)
LOC110531911 LOC106577472 coding upstream 101359 11139647 ~ 11207072 (-)
LOC110531893 LOC105024883 coding upstream 175393 11214204 ~ 11235532 (-)
LOC118942877 NA coding upstream 228572 11267383 ~ 11269567 (-)
LOC110515612 LOC106592662 coding upstream 234606 11273417 ~ 11284152 (-)
LOC110515610 tsn8 coding upstream 249433 11288244 ~ 11304066 (-)
G1707267 NA non-coding downstream 51297 10982601 ~ 10983012 (-)
G1707210 NA non-coding downstream 186317 10847059 ~ 10847992 (-)
G1707203 NA non-coding downstream 191672 10841573 ~ 10842637 (-)
G1707188 NA non-coding downstream 246055 10787198 ~ 10788254 (-)
G1707180 NA non-coding downstream 265003 10768745 ~ 10769306 (-)
G1707294 NA non-coding upstream 27477 11066288 ~ 11066930 (-)
G1707296 NA non-coding upstream 31749 11070560 ~ 11070943 (-)
G1707297 NA non-coding upstream 32840 11071651 ~ 11072007 (-)
G1707319 NA non-coding upstream 71100 11109911 ~ 11110634 (-)
G1707324 NA non-coding upstream 78319 11117130 ~ 11117533 (-)
G1707276 NA other downstream 13271 11019026 ~ 11021038 (-)
LOC110518048 LOC106576476 other downstream 36655 10903853 ~ 11086469 (-)
G1707057 NA other downstream 503038 10530617 ~ 10531271 (-)
G1706993 NA other downstream 665870 10367884 ~ 10368439 (-)
G1707317 NA other upstream 91404 11130215 ~ 11133790 (-)
G1707366 NA other upstream 342851 11363157 ~ 11397594 (-)
LOC118942880 LOC105024872 other upstream 576499 11615310 ~ 11628453 (-)

Expression


Co-expression Network