G1706678


Basic Information

Item Value
gene id G1706678
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11298864 ~ 11335045 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1954658
TACCCATGTCCAAATAATGTGATGGCCAGCAAGAGGGTGCTGATGATCTGAAGAGAATACAACACatgatacaatcattacaatgtacagggtattattctgagaattctactgataatgcacagtaaaggttgatacaatcattacaatgtacagggtattattctgagaattctactgataatgcacagtaaaggttgatacaatcattacaatgtacagggtattatactgggaattctactgataatgcacagtaaaggttgatacaatcattacaatgtacagggtattatactgggaattctactgataatgcactgtaaaggttgatacagtcattacaatgtacagggtattatactgggaattctactgataatgcacagtaaaggttgatacaatcattacaatgtacagggtattatactgggaattatactgataatgcacagtaaaggttgataccgtcattacaatgtacagggtattatactggAATTATACTGATAATGtacagtaaaggttgatacaatcattacaatgtacagcgtattatactgggaattctactgataatgcacagtaaatgttgatacaatcattacaatgtacagggtattatactgagaattctactgataatgcacagtaaaggttgatacaatcattacaatgtacagggtattatactgagaattctactgataatgcacagtaaaggttgatacaatcattacaatgtacagggtattatactgggaattatactgataatgcacagtaaaggttgatacaatcattacaatgtacagggtattattctgagaattctactgataatgcacagtaaaggttgatacaatcattacaatgtacagggtattattctgagaattctactgataatgcacagtaaaggttgatacaatcattacaatgtacagggtattattctgagaattctactgataatgcacagtaaaggttgatacaatcattacaatgtacagggtattatactgagaattctactgataatgcacagtaaaggttgatacaatcattacaatgtacagggtattatactgggaattctactgataatgcacagtaaaggttgatacagtcattacaatgtacagggtattatactgagaattctactgataatgcacagtaaaggttgatacaatcattacaatgtacaggatATTATTCtgagaattctactgataatgcacagtaaaggttgatacagtcattacaatgtacagggtattattctgagaattctactgataatgcacagtaaaggttgatacagtcattacaatgtacagggtattatactgggaattctactgataatgcacagtaaaggttgatacagtcattacaatgtacagggtattatactgggaattctactgataatgcacagtaaaggttgatacaatcattacaatgtacagggtattattctgagaattctactgataatgcacagtaaaggttgatacagtcattacaatgtacagggtattatactgggaattctactgataatgcacagtaaaggtagatacaatcattacaatgtacagggtattatactgggaattctactgataatgcacagtaaaggttgatacagccattacaatgtacagggtattattctgagaattctactgataatgcacagtaaaggttgatacagtCATTTGTTTCAGAGGAGTTGAGGGATCCATTTCTTCATAACTTCAATAATGTATTTGACCAACGCCATCTACAAATGGTTTGTAAGCAGACAGTAAATTGTATTTACATATATTATATCTAGACTAAGAAATAGACTAAGAAATTA
>TU1954659
TACCCATGTCCAAATAATGTGATGGCCAGCAAGAGGGTGCTGATGATCTGAAGAGAATACAACACatgatacaatcattacaatgtacagggtattattctgagaattctactgataatgcacagtaaaggttgatacaatcattacaatgtacagggtattattctgagaattctactgataatgcacagtaaaggttgatacaatcattacaatgtacagggtattatactgggaattctactgataatgcacagtaaaggttgatacaatcattacaatgtacagggtattatactgggaattctactgataatgcactgtaaaggttgatacagtcattacaatgtacagggtattattctgagaattctactgataatgcacagtaaaggttgatacaatcattacaatgtacagggtattatactgagaattctactgataatgcacagtaaaggttgatacagtcattacaatgtacagggtattatactgggaattctactgataatgcacagtaaaggttgatacaatcattacaatgtacagggtattatactgagaattctactgataatgcacagtaaaggttgatacagtcattacaatgtacagggtattattctgagaattctactgataatgcacagtaaaggttgatacaatcattacaatgtacagggtattattctgagaattctactgataatgcacagtaaaggttgatacaatcattacaatgtacagggtattatactgagaattctactgataatgcacagtaaaggttgatacagtcattacaatgtacagggtattattctgagaattctactgataatgcacagtaaaggttgatacagtcattacaatgtacagggtattattctgagaattctactgataatgcacagtaaaggttgatacagtCATTTGTTTCAGAGGAGTTGAGGGATCCATTTCTTCATAACTTCAATAATGCATTTGACCAACGCCATCT
>TU1954663
cattacaatgtacagggtattattctgagaattctactgataatacacagtaaaggttgatacaatcattacaatgtacagggtattatactgaGAATTCTACagataatgcacagtaaaggttgatacaatcattacaatgtacagggtattattctgagaattctactgataatgcacagtaaaggttgatacagtcattacaatgtacagggtattatactgagaattctactgataatgcacagtaaaggttgatacagtcattacaatgtacagggtattatactgggaattctactgataatgcacagtaaaggttgatacagtcattacaatgtacagggtattatactgggaattctactgataatgcacagtaaaggttgatacaatcattacaatgtacagggtattatactgagaattctactgataatgcacagtaaaggttgatacagtcattacaatgtacagggtattattctgagaattctactgataatgcacagtaaaggttgatacaatcattacaatgtacagggtattattctgagaattctactgataatgcacagtaaaggttgatacaatcattacaatgtacagggtattatactgagaattctactgataatgcacagtaaaggttgatacagtcattacaatgtacagggtattattctgagaattctactgataatgcacagtaaaggttgatacagtcattacaatgtacagggtattattctgagaattctactgataatgcacagtaaaggttgatacagtCATTTGTTTCAGAGGAGTTGAGGGATCCATTTCTTCATAACTTCAATAATGCATTTGACCAACGCCATCT
>TU1954660
gttgatacaatcattacaatgtacagggtattattctgagaattctactgataatgcacagtaaaggtagatacaatcattacaatgtacagggtattatactgggaattctactgataatgcacagtaaaggttgatacaatcattacaatgtacagggtattatactgggaattctactgataatgcacagtaaaggttgatacaatcattacaatgtacagggtattattctgagaattctactgataatgcacagtaaaggttgatacaatcattacaatgtacaggatATTATTCtgagaattctactgataatgcacagtaaaggttgatacagtcattacaatgtacagggtattattctgagaattctactgataatgcacagtaaaggttgatacagtCATTTGTTTCAGAGGAGTTGAGGGATCCATTTCTTCATAACTTCAATAATGCATTTGACCAACGCCATCT
>TU1954656
TGGTGGAAGTGCCCATGTCCAAATAATGTGATGGCCAGCAAGAGGGTGCTGATGATCTGAAGAGAATACAACACatgatacaatcattacaatgtacagggtattatactgggaattctactgataatgcacagtaaaggttgatacagtcattacaatgtacagggtattatactgggaattctactgataatgcacagtaaaggttgatacagtcattacaatgtacagggtattatactgggaattctactgataatgcacagtaaaggttgatacaatcattacaatgtacagggtattattctgagaattctactgataatgcacagtaaaggttgatacagtcattacaatgtacagggtattatactgggaattctactgataatgcacagtaaaggtagatacaatcattacaatgtacagggtattatactgggaattctactgataatgcacagtaaaggttgatacagccattacaatgtacagggtattattctgagaattctactgataatgcacagtaaaggttgatacagtCATTTGTTTCAGAGGAGTTGAGGGATCCATTTCTTCATAACTTCAATAATGTATTTGACCAACGCCATCTACAAATGGTTTGTAAGCAGACAGTAAATTGTATTTACATATATTATATCTAGACTAAGAAATAGACTAAGAAATTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1954658 False 1870 lncRNA 0.33 4 11298864 11335045
TU1954659 False 1003 lncRNA 0.34 2 11298864 11303165
TU1954663 False 862 lncRNA 0.33 2 11301116 11303165
TU1954660 False 477 lncRNA 0.33 2 11302161 11303165
TU1954656 True 692 lncRNA 0.35 2 11334156 11335045

Neighbor

gene id symbol gene type direction distance location
LOC118942876 fgl2 coding upstream 97915 11194545 ~ 11200949 (+)
LOC110531908 LOC106594049 coding upstream 160051 11103180 ~ 11138813 (+)
LOC118942875 NA coding upstream 186189 11112212 ~ 11112675 (+)
LOC118942874 LOC106609820 coding upstream 396295 10900849 ~ 10902569 (+)
LOC110510616 NA coding upstream 501873 10794769 ~ 10796991 (+)
LOC110499792 LOC106595912 coding downstream 6591 11341636 ~ 11354995 (+)
LOC110518478 lsm8 coding downstream 20953 11355998 ~ 11359023 (+)
LOC110490628 LOC106609728 coding downstream 75406 11410451 ~ 11414640 (+)
LOC110503752 LOC106576575 coding downstream 97239 11432284 ~ 11468646 (+)
nrcama LOC105024872 coding downstream 144735 11479780 ~ 11624211 (+)
G1706657 NA non-coding upstream 14744 11283196 ~ 11284120 (+)
G1706655 NA non-coding upstream 21392 11276700 ~ 11277472 (+)
G1706654 NA non-coding upstream 22272 11276050 ~ 11276592 (+)
G1706653 LOC106592662 non-coding upstream 23085 11274946 ~ 11275779 (+)
G1706649 NA non-coding upstream 37592 11261057 ~ 11261272 (+)
G1706665 NA non-coding downstream 28111 11363156 ~ 11433934 (+)
G1706708 NA non-coding downstream 35086 11370131 ~ 11383885 (+)
G1706710 NA non-coding downstream 51688 11386733 ~ 11403507 (+)
G1706662 NA non-coding downstream 61464 11396509 ~ 11397615 (+)
G1706723 NA non-coding downstream 83627 11418672 ~ 11419205 (+)
G1706652 NA other upstream 26391 11270729 ~ 11272473 (+)
G1706152 NA other upstream 1163480 10134388 ~ 10135384 (+)
G1706090 NA other upstream 1380845 9915713 ~ 9918019 (+)
G1706013 NA other upstream 1545391 9748185 ~ 9753473 (+)
G1706711 NA other downstream 62995 11398040 ~ 11399288 (+)
G1707493 LOC106609754 other downstream 233384 11568429 ~ 11568956 (+)
G1707462 NA other downstream 318856 11653901 ~ 11654623 (+)
G1707772 LOC106576513 other downstream 528617 11863662 ~ 11864573 (+)
G1708014 NA other downstream 912983 12248028 ~ 12250124 (+)

Expression


Co-expression Network