G1707395 (LOC106596128)


Basic Information

Item Value
gene id G1707395
gene name LOC106596128
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11311275 ~ 11313725 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1955647
ATTTTCACCGGAACAGCAAACAAACATTGGCTCAAGGTTGAATTCAAAAGGTAAGATACATACATATAAGCTGTAGACTGTACCTCGTGTTTGGCTTGATATCCTTTCACACAATTCACAAACAGGTATAGGCTGGCCAGTGACATACCTACAGAAAACAGAATCACAGCCCACTTCTTCTCCTTGCGAGCTCCATAGACCCCAAAGATTGAAAGGGCCAGGGTTGCTGCGTCTAGGACATACAGAACTGCTATCCCTGGCAGCATCTTGTCTATTTCTTCTGATTGGTGGAAGTGCCCATGTCCAAATAATGTGATGGCCAGCAAGAGGGTGCTGATGATCCCtatcaagacacacacacaaatgaacgCCCGTTTTACCCAGATATTAATTCTTCCCATTTTAATATTTGGTTATGATACAAACAACAGCTTAGATAAATTGTTCACTTCAGAGAGGGGCTAAATTAAATCCAGAAAATGGATCGTCCGATTTCTTTAACCGGTTTTTCTTCTCAGCGTGAGTTTGTTGACATTGCCTAACGACTCAAACTGAATTATTCCGCTGCTCTATGTTCGCTACATACTTCGGAGAATAAACGAAGGTCCATGGGTGTGGCGTATCGTTTTGACGGAGCAAGGA
>TU1955646
TCTACCACTTAAGGGTACAGGTCTTGGCAAGCTTACCAGAATCACAGCCCACTTCTTCTCCTTGCGAGCTCCATAGACCCCAAAGATTGAAAGGGCCAGGGTTGCTGCGTCTAGGACATACAGAACTGCTATCCCTGGCAGCATCTTGTCTATTTCTTCTGATTGGTGGAAGTGCCCATGTCCAAATAATGTGATGGCCAGCAAGAGGGTGCTGATGATCTGAAGAGAATACAACACatgatacaatcattacaatgtacagggtattatactgggaattctactgataatgcacagtaaaggttgatacaatcattacaatgtacagggtattatactgggaattctactgataatgcacagtaaaggttgatacaatcattacaatgtacagggtattatactgggaattctactgataatgcacagtaaatGTAGATACAATctttacaatgtacagggtattatactggGAATTCTACTGATAATACACAGTAAATGTAGATACAATctttacaatgtacagggtattattctgagaattctactgataatacacagtaaa

Function

NR:

description
tetraspanin-8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1955647 False 642 lncRNA 0.43 4 11311275 11313725
TU1955646 True 565 lncRNA 0.39 4 11312242 11313276

Neighbor

gene id symbol gene type direction distance location
LOC110515610 tsn8 coding downstream 7209 11288244 ~ 11304066 (-)
LOC110515612 LOC106592662 coding downstream 27123 11273417 ~ 11284152 (-)
LOC118942877 NA coding downstream 41708 11267383 ~ 11269567 (-)
LOC110531893 LOC105024883 coding downstream 75743 11214204 ~ 11235532 (-)
LOC110531911 LOC106577472 coding downstream 104203 11139647 ~ 11207072 (-)
LOC110499803 LOC106609751 coding upstream 13548 11327273 ~ 11335783 (-)
tymp typh coding upstream 52990 11366715 ~ 11370357 (-)
LOC118942879 typh coding upstream 65874 11379599 ~ 11383369 (-)
LOC110490863 NA coding upstream 71315 11361637 ~ 11405329 (-)
LOC118942878 typh coding upstream 79307 11393032 ~ 11397690 (-)
G1707391 NA non-coding downstream 13506 11297397 ~ 11297769 (-)
G1707387 NA non-coding downstream 26230 11284841 ~ 11285045 (-)
G1707384 NA non-coding downstream 33391 11277665 ~ 11277884 (-)
G1707374 NA non-coding downstream 51463 11259079 ~ 11259812 (-)
G1707359 NA non-coding downstream 80945 11228597 ~ 11230330 (-)
G1707396 LOC106596128 non-coding upstream 28 11313753 ~ 11315006 (-)
G1707397 NA non-coding upstream 3253 11316978 ~ 11317841 (-)
G1707401 NA non-coding upstream 12504 11326229 ~ 11326834 (-)
G1707392 NA non-coding upstream 24269 11337994 ~ 11341126 (-)
G1707409 NA non-coding upstream 27516 11341241 ~ 11341544 (-)
G1707317 NA other downstream 177485 11130215 ~ 11133790 (-)
G1707276 NA other downstream 290237 11019026 ~ 11021038 (-)
LOC110518048 LOC106576476 other downstream 313621 10903853 ~ 11086469 (-)
G1707366 NA other upstream 67937 11363157 ~ 11397594 (-)
LOC118942880 LOC105024872 other upstream 301585 11615310 ~ 11628453 (-)
prickle1b LOC106576510 other upstream 627404 11933307 ~ 11954482 (-)
LOC110499744 LOC106609792 other upstream 807051 12119840 ~ 12125727 (-)
LOC110512965 LOC106609709 other upstream 1151502 12464677 ~ 12465880 (-)

Expression


Co-expression Network