G1707396 (LOC106596128)


Basic Information

Item Value
gene id G1707396
gene name LOC106596128
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11313753 ~ 11315006 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1955648
GATCTGAAATACATACCCATAATGCGTTAAGTGCTACTAATGTTCCTATCATCAGGCTGATTGCATAGCCCATGAAAGGGATCAGGATGGGAAGACATGGCTCTTTATATACCAGCATGTGTTCATCCATTAATCCCTTGTGGTCATCATCCTCAGACATATCACTGTTGGGATAGTGAATAACAAATCTTGTATTGTTACCACGAGCAACACATTTAAAGTCTGTTGAGTCCTCATCAGaacagagacaggagagtgggATGTCTGTGCCCCAGTCTTGGTAGCCTTGTACGAGCCCACAGCATTTGAAGTTAGCTTGAAAGTAGTACATCTGTTCTATATCGTTTTGTTTGGCTCCACTGAGAGGCATCATGGCTAGGTCTTCCTTTCTGCTTAACTCCTCCATCTTGAAATGAATGAGGTTTACATTGACTGTTATATTCACAGCTAAAACCTATACAGTAATAATCTACGACTTTGATAGGAACAGACTGAATTATCAAGAGTCAGATATATTCCACCATCATGCTTTATACTATAA

Function

NR:

description
tetraspanin-8-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1955648 True 541 lncRNA 0.40 4 11313753 11315006

Neighbor

gene id symbol gene type direction distance location
LOC110515610 tsn8 coding downstream 9687 11288244 ~ 11304066 (-)
LOC110515612 LOC106592662 coding downstream 29601 11273417 ~ 11284152 (-)
LOC118942877 NA coding downstream 44186 11267383 ~ 11269567 (-)
LOC110531893 LOC105024883 coding downstream 78221 11214204 ~ 11235532 (-)
LOC110531911 LOC106577472 coding downstream 106681 11139647 ~ 11207072 (-)
LOC110499803 LOC106609751 coding upstream 12267 11327273 ~ 11335783 (-)
tymp typh coding upstream 51709 11366715 ~ 11370357 (-)
LOC118942879 typh coding upstream 64593 11379599 ~ 11383369 (-)
LOC110490863 NA coding upstream 70034 11361637 ~ 11405329 (-)
LOC118942878 typh coding upstream 78026 11393032 ~ 11397690 (-)
G1707395 LOC106596128 non-coding downstream 28 11311275 ~ 11313725 (-)
G1707391 NA non-coding downstream 15984 11297397 ~ 11297769 (-)
G1707387 NA non-coding downstream 28708 11284841 ~ 11285045 (-)
G1707384 NA non-coding downstream 35869 11277665 ~ 11277884 (-)
G1707374 NA non-coding downstream 53941 11259079 ~ 11259812 (-)
G1707397 NA non-coding upstream 1972 11316978 ~ 11317841 (-)
G1707401 NA non-coding upstream 11223 11326229 ~ 11326834 (-)
G1707392 NA non-coding upstream 22988 11337994 ~ 11341126 (-)
G1707409 NA non-coding upstream 26235 11341241 ~ 11341544 (-)
G1707410 LOC106609679 non-coding upstream 26644 11341650 ~ 11341897 (-)
G1707317 NA other downstream 179963 11130215 ~ 11133790 (-)
G1707276 NA other downstream 292715 11019026 ~ 11021038 (-)
LOC110518048 LOC106576476 other downstream 316099 10903853 ~ 11086469 (-)
G1707366 NA other upstream 66656 11363157 ~ 11397594 (-)
LOC118942880 LOC105024872 other upstream 300304 11615310 ~ 11628453 (-)
prickle1b LOC106576510 other upstream 626123 11933307 ~ 11954482 (-)
LOC110499744 LOC106609792 other upstream 805770 12119840 ~ 12125727 (-)
LOC110512965 LOC106609709 other upstream 1150221 12464677 ~ 12465880 (-)

Expression


Co-expression Network