G1707494


Basic Information

Item Value
gene id G1707494
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11569729 ~ 11573981 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1955774
CACTATACTAATCCACCACAGACACAGCACcactacattaaccaccacagatacagccacactacattaaccaccacagatacagccacactacattaaccaccacagatacagccacactacattaaccaccacagatacagccacactacattaaccaccacagatacagcaacactacattaaccaccacagatacagcaacactacatgaaccaccacagatacagcaacactacattaacccaccacagatacagccacactacattaaccaccacagatacagccacactacattaacccaccac
>TU1955772
cactacattaaccaccacagacacagccacactacattaaccaccacagatacaacaacactacattaacccaccacagatacagccacactacattaaccaccacagatacagccattaaccaccacagatacagcaacactacattaaccaccacagatacaacaacactacattaacccaccacagatacagccacactacattaaccaccacagatacagcaacactacattaaccaccacagatacagccattaacccaccacagatacagcaacactacattaacccaccacagatacagccacactacattgatccaccacagatacagccattaaccaccacagatacagcaacactacattaaccaccacagatacagccacactacattaacccaccgcagatacagccaccacagattaacccaccacagatacagcaacactacattaacccaccacagatacagccacactacattaacccaccacagatacagccacactacattaacccaccacagatacagccacactacattaaccaccacagatacagccacactacattaaccaccacagatacagccacactacattaaccaccacagatacagcaacactacattaaccaccacagatacagccacactacattaaccaccacagatacagccattaaccaccacagatacagcaacactacattaaccaccacagatacagccacactacattaaccaccacagatacagccacactacattaaccaccacagatacagccacactacattaaccaccacagatacagccacactacattaaccaccacagatacagcaacactacattaaccaccacagatacagcaacactacattaaccaccacagatacaacaacaagccattaacccaccacagatacagccacactacattaaccaccacagatacaacaacactacattaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1955774 False 311 lncRNA 0.45 3 11569729 11573981
TU1955772 True 981 lncRNA 0.44 3 11569818 11573221

Neighbor

gene id symbol gene type direction distance location
LOC110503752 LOC106576575 coding upstream 101083 11432284 ~ 11468646 (+)
LOC110490628 LOC106609728 coding upstream 155089 11410451 ~ 11414640 (+)
LOC110518478 lsm8 coding upstream 210706 11355998 ~ 11359023 (+)
LOC110499792 LOC106595912 coding upstream 214734 11341636 ~ 11354995 (+)
LOC110499797 LOC106596128 coding upstream 253007 11311190 ~ 11316722 (+)
cntn1b LOC106593403 coding downstream 56451 11630432 ~ 11660551 (+)
LOC110515322 LOC106576579 coding downstream 150445 11724426 ~ 11797595 (+)
pphln1 LOC106593546 coding downstream 316749 11890730 ~ 11931253 (+)
LOC118943005 LOC106592567 coding downstream 794888 12368869 ~ 12384112 (+)
LOC118942882 LOC106609674 coding downstream 817648 12391629 ~ 12421266 (+)
G1707481 NA non-coding upstream 30042 11537901 ~ 11539687 (+)
G1706737 NA non-coding upstream 92260 11477264 ~ 11477469 (+)
G1706735 NA non-coding upstream 95593 11473471 ~ 11474136 (+)
G1706723 NA non-coding upstream 150524 11418672 ~ 11419205 (+)
G1707497 NA non-coding downstream 4681 11578662 ~ 11579435 (+)
G1707504 NA non-coding downstream 33665 11607646 ~ 11607925 (+)
G1707509 NA non-coding downstream 44978 11618959 ~ 11622767 (+)
G1707461 NA non-coding downstream 80943 11654924 ~ 11656704 (+)
G1707515 NA non-coding downstream 88724 11662705 ~ 11663646 (+)
G1707493 LOC106609754 other upstream 773 11568429 ~ 11568956 (+)
G1706711 NA other upstream 170441 11398040 ~ 11399288 (+)
G1706652 NA other upstream 297256 11270729 ~ 11272473 (+)
LOC110531908 LOC106594049 other upstream 453304 11103180 ~ 11138813 (+)
G1706152 NA other upstream 1434345 10134388 ~ 10135384 (+)
G1707462 NA other downstream 79920 11653901 ~ 11654623 (+)
G1707772 LOC106576513 other downstream 289681 11863662 ~ 11864573 (+)
G1708014 NA other downstream 674047 12248028 ~ 12250124 (+)
G1708323 NA other downstream 1004627 12578608 ~ 12584156 (+)
G1708367 NA other downstream 1075705 12649686 ~ 12651577 (+)

Expression


Co-expression Network