G1707956 (LOC106595172)


Basic Information

Item Value
gene id G1707956
gene name LOC106595172
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 12117290 ~ 12121159 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1956390
ggccatactgtgtacataacacaatactgtagcagtatcctacatgtacacaagaggccatactgtgtacacaacacaatactgtagcagtatcctacatgtacacaagaggccatactgtgtacacaacacaatactgtagcagtatcctacatgtacacaagaggccatactgtgtacacaacacaatactgtagcagtatcctacaagtacacaagaggccatacatactgtgtacacaacccaacacaatactgtagcagtatcctacaagtacacaagaggccatactgtgtacacaacacaatactgtagcagtatcctacaagtacacaagaggccatacatactgtgtacacaacccaacacaatactgtagcagtatcctacatgtacacaagaggccatactgtgtacacaacacaatactgtagcagtatcctacaagtacacaagaggccatactgtgtacacaacacaatactgtagcagtatcctacatgtacacaagaggccatactgtgtacacaacacaatactgtagcagtatcctacatgtacacaagaggccataatgtgtacacaacacaatactgtagcagtatcctacatgtacacaagaggccatactgtgtacacaacacaatactgtagcagtatcctacatgtacacaagaggccatactgtgtacaaaacacaatactgtagcagtatcctacatgtacacaagaggccatactgtgtacacaacacaatactgtagcagtaccctacatgtacacaagaggccatactgtgtacaaaacacaatactgtagcagtatcctacatgtacacaagaggccatactgtgtacacaacacaatactgtagcagtatcctacatgtacacaagaggccatactgtgtacacaacacaatactgtagcagtatcctacatgtacacaagaggccatactgtgtacacaacacaatactgtagcagtatcctacatgtacacaagaggccatactgtgtacacaacacaatactgtagaagtATCCTACAAGTACACAAGAGGCCATACTGTGTACACAACACTGTAGCAGTATCCTACAAGTACACAAGAGGCCATACTGTGTACACAACACTGTAGCAGTATCCTACAAGTACACAAGAGGCCATAAtgtgtacacaacacaatactgtagcagtatcctACAAGCACACAAGAGGCCATAAtgtgtacacaacacaatactgtaGCAGTACCCTACATGTACACAAGAGGCCATACTGTGTACAAAGTACAATATTAATCAAAATACTGTACACACAGTAGTACATACAACATCTGAGACTCCAGTTTAAGGGTCACATTTCATGACCTCTCTGAGGCAGACAGTGGCGTAGCAGGAAGAGTCCAGGTCAAAGTTCAACGTCAAACTAGGTGTGTCTGTGTCAGGGTACTTCACCGTTGACTCCCCCTCTCCATTACCCTGCacgctctcccctcctctctgcctctccagaCCTCCAGGTCTAGGTGTGTCTGTGTCAGGGTGCTGTGGTACCGCTCCACTAGCCTGTGACTTTCCATTCCACTCCTGTTGCCTCTCCCCAGCTCTCTGGCCCTGCTCCAGCCTGTAGGTCAggctatgtgggatggccagtaaGGGGCGGTAGCAGCCAGGGAGGTTCAGTTTGAGAGGAGTGACTCTGAAACGACAGCTCTGTAGTCCATCCCTCGCCAGTCTCTCCTGGTACCAGCCCCCTACAGGGTTCTCT

Function

NR:

description
pseudouridylate synthase 7 homolog-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1956390 True 1772 lncRNA 0.45 3 12117290 12121159

Neighbor

gene id symbol gene type direction distance location
pphln1 LOC106593546 coding upstream 186037 11890730 ~ 11931253 (+)
LOC110515322 LOC106576579 coding upstream 319695 11724426 ~ 11797595 (+)
cntn1b LOC106593403 coding upstream 456739 11630432 ~ 11660551 (+)
nrcama LOC105024872 coding upstream 493079 11479780 ~ 11624211 (+)
LOC110503752 LOC106576575 coding upstream 648644 11432284 ~ 11468646 (+)
LOC118943005 LOC106592567 coding downstream 247710 12368869 ~ 12384112 (+)
LOC118942882 LOC106609674 coding downstream 270470 12391629 ~ 12421266 (+)
LOC110490813 LOC106576520 coding downstream 276641 12397800 ~ 12401053 (+)
LOC118936492 LOC106609674 coding downstream 287394 12408553 ~ 12415265 (+)
LOC110490708 LOC106576521 coding downstream 296277 12417436 ~ 12419416 (+)
G1707946 NA non-coding upstream 17926 12099123 ~ 12099364 (+)
G1707932 NA non-coding upstream 40909 12075980 ~ 12076381 (+)
G1707906 NA non-coding upstream 73430 12043614 ~ 12043860 (+)
G1707899 NA non-coding upstream 78933 12038076 ~ 12038357 (+)
G1707896 NA non-coding upstream 87644 12028498 ~ 12029646 (+)
G1707961 NA non-coding downstream 5269 12126428 ~ 12128169 (+)
G1707966 NA non-coding downstream 22268 12143427 ~ 12143788 (+)
G1707967 NA non-coding downstream 35088 12156247 ~ 12156955 (+)
G1707970 NA non-coding downstream 40374 12161533 ~ 12161870 (+)
G1707971 NA non-coding downstream 43876 12165035 ~ 12165301 (+)
G1707772 LOC106576513 other upstream 252717 11863662 ~ 11864573 (+)
G1707462 NA other upstream 462667 11653901 ~ 11654623 (+)
G1707493 LOC106609754 other upstream 548334 11568429 ~ 11568956 (+)
G1706711 NA other upstream 718002 11398040 ~ 11399288 (+)
G1706652 NA other upstream 844817 11270729 ~ 11272473 (+)
G1708014 NA other downstream 126869 12248028 ~ 12250124 (+)
G1708323 NA other downstream 457449 12578608 ~ 12584156 (+)
G1708367 NA other downstream 528527 12649686 ~ 12651577 (+)
G1708495 NA other downstream 663048 12784207 ~ 12785502 (+)
LOC110490810 LOC106576597 other downstream 679609 12745000 ~ 12825754 (+)

Expression


Co-expression Network