G1708160


Basic Information

Item Value
gene id G1708160
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 12355378 ~ 12355813 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1956635
cagttttaccagggatttttactcctaaacacgttctgttatagccacagacccaatttaaccagttttagaaacttcagagtgttttctatccacacatacttatcctatgcatatactatattcctggcatgagtagcaggactttgaaatgttgcgcgatttttaacaaaaagctgcgaaaattcgcatcatccataacaggttcTATCCCCAAAccttaagactcctgaacagctaatcaaagggctacccagacccctcttttacgctgctgctactctgtttataatctatgcatagtcactttaactctaccaacatgtacatattacctcaattacctcgactaaccggttcccctgcacattgactgtgtaccggtaccccctgtatacagccttgctattgttattttactgctgctctttaatta

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1956635 True 436 lncRNA 0.40 1 12355378 12355813

Neighbor

gene id symbol gene type direction distance location
pphln1 LOC106593546 coding upstream 424125 11890730 ~ 11931253 (+)
LOC110515322 LOC106576579 coding upstream 557783 11724426 ~ 11797595 (+)
cntn1b LOC106593403 coding upstream 694827 11630432 ~ 11660551 (+)
nrcama LOC105024872 coding upstream 731167 11479780 ~ 11624211 (+)
LOC110503752 LOC106576575 coding upstream 886732 11432284 ~ 11468646 (+)
LOC118943005 LOC106592567 coding downstream 13056 12368869 ~ 12384112 (+)
LOC118942882 LOC106609674 coding downstream 35816 12391629 ~ 12421266 (+)
LOC110490813 LOC106576520 coding downstream 41987 12397800 ~ 12401053 (+)
LOC118936492 LOC106609674 coding downstream 52740 12408553 ~ 12415265 (+)
LOC110490708 LOC106576521 coding downstream 61623 12417436 ~ 12419416 (+)
G1708135 NA non-coding upstream 13166 12333933 ~ 12342212 (+)
G1707971 NA non-coding upstream 190077 12165035 ~ 12165301 (+)
G1707970 NA non-coding upstream 193508 12161533 ~ 12161870 (+)
G1707967 NA non-coding upstream 198423 12156247 ~ 12156955 (+)
G1707966 NA non-coding upstream 211590 12143427 ~ 12143788 (+)
G1708165 NA non-coding downstream 5657 12361470 ~ 12365511 (+)
G1708247 NA non-coding downstream 101039 12456852 ~ 12457169 (+)
G1708250 NA non-coding downstream 104154 12459967 ~ 12460208 (+)
G1708257 NA non-coding downstream 112577 12468390 ~ 12468614 (+)
G1708014 NA other upstream 105254 12248028 ~ 12250124 (+)
G1707772 LOC106576513 other upstream 490805 11863662 ~ 11864573 (+)
G1707462 NA other upstream 700755 11653901 ~ 11654623 (+)
G1707493 LOC106609754 other upstream 786422 11568429 ~ 11568956 (+)
G1706711 NA other upstream 956090 11398040 ~ 11399288 (+)
G1708323 NA other downstream 222795 12578608 ~ 12584156 (+)
G1708367 NA other downstream 293873 12649686 ~ 12651577 (+)
G1708495 NA other downstream 428394 12784207 ~ 12785502 (+)
LOC110490810 LOC106576597 other downstream 444955 12745000 ~ 12825754 (+)
G1708635 NA other downstream 595872 12951685 ~ 12952515 (+)

Expression


Co-expression Network