G1708271


Basic Information

Item Value
gene id G1708271
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 12487679 ~ 12488026 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1956765
cacaactctatcctcttgattcctgcttacaagcaaaaattaaagcaggaagcagcagtgactcggtctataaaaaagtggtcagatgaagcagatgctaaactacaggactgttttgctagcacagactggaacatgttccaggattcttccgatggcattgaggaatacaccacaagagtcactggctttatcaataagtgcatcaaggacgtcgtccccacagtgactgtacgtacataccccaaccagaagccatggattacaggcaacattcgcactgagctaaagggcagagctgccgctttcaaggtgcgggactctaaaacccggaagcttacaagaaat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1956765 True 348 lncRNA 0.46 1 12487679 12488026

Neighbor

gene id symbol gene type direction distance location
LOC110490703 LOC106594938 coding upstream 39371 12421633 ~ 12448308 (+)
LOC118942882 LOC106609674 coding upstream 66413 12391629 ~ 12421266 (+)
LOC110490810 LOC106576597 coding downstream 256974 12745000 ~ 12825754 (+)
LOC110516535 LOC106576596 coding downstream 341143 12829169 ~ 12837237 (+)
LOC118943029 NA coding downstream 354356 12771599 ~ 12842545 (+)
LOC118942883 LOC106596479 coding downstream 356077 12844103 ~ 12860368 (+)
cmas cmas coding downstream 379462 12867488 ~ 12885849 (+)
G1708268 NA non-coding upstream 3374 12483942 ~ 12484305 (+)
G1708257 NA non-coding upstream 19065 12468390 ~ 12468614 (+)
G1708250 NA non-coding upstream 27471 12459967 ~ 12460208 (+)
G1708247 NA non-coding upstream 30510 12456852 ~ 12457169 (+)
G1708276 NA non-coding downstream 6321 12494347 ~ 12494661 (+)
G1708279 NA non-coding downstream 7956 12495982 ~ 12496220 (+)
G1708281 NA non-coding downstream 8990 12497016 ~ 12497371 (+)
G1708282 NA non-coding downstream 9669 12497695 ~ 12498008 (+)
G1708286 NA non-coding downstream 16009 12504035 ~ 12510265 (+)
G1708014 NA other upstream 237555 12248028 ~ 12250124 (+)
G1707772 LOC106576513 other upstream 623106 11863662 ~ 11864573 (+)
G1707462 NA other upstream 833056 11653901 ~ 11654623 (+)
G1707493 LOC106609754 other upstream 918723 11568429 ~ 11568956 (+)
G1706711 NA other upstream 1088391 11398040 ~ 11399288 (+)
G1708323 NA other downstream 90582 12578608 ~ 12584156 (+)
G1708367 NA other downstream 161660 12649686 ~ 12651577 (+)
G1708495 NA other downstream 296181 12784207 ~ 12785502 (+)
G1708635 NA other downstream 463659 12951685 ~ 12952515 (+)

Expression


Co-expression Network