G1708301


Basic Information

Item Value
gene id G1708301
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 12525585 ~ 12526040 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1956797
gtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttcttcacaacagtatctcggtcctgcctggtgtgttccttgttcttcatgatgctctgtgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctgtagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttttcagattttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattctccacaaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagt

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1956797 True 456 lncRNA 0.38 1 12525585 12526040

Neighbor

gene id symbol gene type direction distance location
LOC110490703 LOC106594938 coding upstream 77277 12421633 ~ 12448308 (+)
LOC118942882 LOC106609674 coding upstream 104319 12391629 ~ 12421266 (+)
LOC110490810 LOC106576597 coding downstream 218960 12745000 ~ 12825754 (+)
LOC110516535 LOC106576596 coding downstream 303129 12829169 ~ 12837237 (+)
LOC118943029 NA coding downstream 316342 12771599 ~ 12842545 (+)
LOC118942883 LOC106596479 coding downstream 318063 12844103 ~ 12860368 (+)
cmas cmas coding downstream 341448 12867488 ~ 12885849 (+)
G1708295 NA non-coding upstream 3822 12521411 ~ 12521763 (+)
G1708285 NA non-coding upstream 10959 12510700 ~ 12514626 (+)
G1708286 NA non-coding upstream 15320 12504035 ~ 12510265 (+)
G1708282 NA non-coding upstream 27577 12497695 ~ 12498008 (+)
G1708281 NA non-coding upstream 28214 12497016 ~ 12497371 (+)
G1708304 NA non-coding downstream 18071 12544111 ~ 12544347 (+)
G1708308 NA non-coding downstream 23656 12549696 ~ 12549954 (+)
G1708313 NA non-coding downstream 29998 12556038 ~ 12556360 (+)
G1708314 NA non-coding downstream 31887 12557927 ~ 12560086 (+)
G1708317 LOC106576569 non-coding downstream 40954 12566994 ~ 12568368 (+)
G1708014 NA other upstream 275461 12248028 ~ 12250124 (+)
G1707772 LOC106576513 other upstream 661012 11863662 ~ 11864573 (+)
G1707462 NA other upstream 870962 11653901 ~ 11654623 (+)
G1707493 LOC106609754 other upstream 956629 11568429 ~ 11568956 (+)
G1706711 NA other upstream 1126297 11398040 ~ 11399288 (+)
G1708323 NA other downstream 52568 12578608 ~ 12584156 (+)
G1708367 NA other downstream 123646 12649686 ~ 12651577 (+)
G1708495 NA other downstream 258167 12784207 ~ 12785502 (+)
G1708635 NA other downstream 425645 12951685 ~ 12952515 (+)

Expression


Co-expression Network