G1708317 (LOC106576569)


Basic Information

Item Value
gene id G1708317
gene name LOC106576569
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 12566994 ~ 12568368 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1956822
AGTTATCAGACTGACTAACCTTGACAGAGAGCAGTCGTGTCAGGTAGATCTCAGCGATGGCTTTAGTCGTGGCCTTGGCCTTCAAACTTCCTCTCTTAGATTTGACCTCATCCAGCTCGTCTGCTGGCCGCACCAGGTGGAACACCTTGTCATCTTCCAACAGGGCGTTCTTTTCTTCATGGCTATCCTGGTTCTGGTGGAACTGGCGATGGGTGTGAAGCACTCTGGACAGCACCAGTGTGGCATTGTCTCTCACCTGAAACACACAGTACCACATATAGTTAACACAGTACCATACCACATATAgttaacacagtaccacatatagttaacacagtaccacatatagttaacacagtaccacatatagttaacacagtaccacataTAGTTAACACTGTACCGTACCACATATAgttaacacagtaccacataTAGTTAACACAGTACCGTACCACATATAgttaacacagtaccacatattgttaacacagtaccacatattgttaacacagtaccacatatagttaacacagtaccacatatagttaacacagtaccacatatagttaacacagtaccacatatagttaacacagtaccacataTAGTTAACACTGTACCGTACCACATATAgttaacacagtaccacataTAGTTAACACTGTACCGTACCACATATAgttaacacagtaccacataTAGTTAACACAGTACCGTACCACATATAGTTAACACTGTACCACATATAGTTAACACTGTACCGTACCACATATAGTTAACACAGTACCGTACCACATATAGTTAACACAGTACCGTACCACATATAGTTAACACAGTACCGTACCACATATAgttaacacagtaccacatatagttaacacagtaccacataTAGTTAACACAGTACCGTACCACATATAGTTAACACAGTACCGTACCACATATAgttaacacagtaccacatatagttaacacagtaccacataTAGTTAACACCGTACCACATATAGTTAACACTGTACCGTACCACATATAGTTAACACTGTACCGTACCACATATAgttaacacagtaccacataTAGTTAACACAGTAC

Function

NR:

description
plexin-B2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1956822 True 1098 lncRNA 0.40 2 12566994 12568368

Neighbor

gene id symbol gene type direction distance location
LOC110490703 LOC106594938 coding upstream 118686 12421633 ~ 12448308 (+)
LOC118942882 LOC106609674 coding upstream 145728 12391629 ~ 12421266 (+)
LOC110490810 LOC106576597 coding downstream 176632 12745000 ~ 12825754 (+)
LOC110516535 LOC106576596 coding downstream 260801 12829169 ~ 12837237 (+)
LOC118943029 NA coding downstream 274014 12771599 ~ 12842545 (+)
LOC118942883 LOC106596479 coding downstream 275735 12844103 ~ 12860368 (+)
cmas cmas coding downstream 299120 12867488 ~ 12885849 (+)
G1708314 NA non-coding upstream 6908 12557927 ~ 12560086 (+)
G1708313 NA non-coding upstream 10634 12556038 ~ 12556360 (+)
G1708308 NA non-coding upstream 17040 12549696 ~ 12549954 (+)
G1708304 NA non-coding upstream 22647 12544111 ~ 12544347 (+)
G1708301 NA non-coding upstream 40954 12525585 ~ 12526040 (+)
G1708336 LOC106576598 non-coding downstream 33749 12602117 ~ 12603411 (+)
G1708338 NA non-coding downstream 37797 12606165 ~ 12607242 (+)
G1708353 NA non-coding downstream 58589 12626957 ~ 12627207 (+)
G1708370 NA non-coding downstream 89638 12658006 ~ 12658650 (+)
G1708410 NA non-coding downstream 144629 12712997 ~ 12732942 (+)
G1708014 NA other upstream 316870 12248028 ~ 12250124 (+)
G1707772 LOC106576513 other upstream 702421 11863662 ~ 11864573 (+)
G1707462 NA other upstream 912371 11653901 ~ 11654623 (+)
G1707493 LOC106609754 other upstream 998038 11568429 ~ 11568956 (+)
G1706711 NA other upstream 1167706 11398040 ~ 11399288 (+)
G1708323 NA other downstream 10240 12578608 ~ 12584156 (+)
G1708367 NA other downstream 81318 12649686 ~ 12651577 (+)
G1708495 NA other downstream 215839 12784207 ~ 12785502 (+)
G1708635 NA other downstream 383317 12951685 ~ 12952515 (+)

Expression


Co-expression Network