G1708336 (LOC106576598)


Basic Information

Item Value
gene id G1708336
gene name LOC106576598
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 12602117 ~ 12603411 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1956845
GGCTTACATTATTAAGTCCTGTTTATAAAGAATATCTGAGTGGTCGATCTCGGCTTGGAAAGTGATCTTgcctcagaaaaggttggtgaccaatAAGGGTTTTACTGGGGACACTTACGGCGTGTTCCTGGACTTCCTGCCGGTGGCGGCACAGTTGTAGAACTTGTATTCGCTGGACGTCACCTCGATGTCGTCGTTGACCAGGATCTTCACCTGCACCGTCACAAAGTCCTGCTTGTCAGGTGTAGAGGGGATGTTCACAGGGTCAGGGAGGGCACAGATCACCTTCTGGTCCATCACCACAGCTTCACTAGTGTCCGAACCAAACCTGCACTTGATAATGTCAGAAGGGCCGATCTTGGGGAGGGAGGGGATGTAGATTTCAACCTGCTCGGTCTTCCTACAGCTGAGGTTGGGTGGGTTAAACGCCTGGATCTGAACACACTGCTGGTTGGGGCTCCACAGCCACGTGTTGTCATCCTCAGCCCTGGGACAGTCTCCCTTCCTGGT

Function

NR:

description
plexin-B2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1956845 True 510 lncRNA 0.53 3 12602117 12603411

Neighbor

gene id symbol gene type direction distance location
LOC110490703 LOC106594938 coding upstream 153809 12421633 ~ 12448308 (+)
LOC118942882 LOC106609674 coding upstream 180851 12391629 ~ 12421266 (+)
LOC110490810 LOC106576597 coding downstream 141589 12745000 ~ 12825754 (+)
LOC110516535 LOC106576596 coding downstream 225758 12829169 ~ 12837237 (+)
LOC118943029 NA coding downstream 238971 12771599 ~ 12842545 (+)
LOC118942883 LOC106596479 coding downstream 240692 12844103 ~ 12860368 (+)
cmas cmas coding downstream 264077 12867488 ~ 12885849 (+)
G1708317 LOC106576569 non-coding upstream 33749 12566994 ~ 12568368 (+)
G1708314 NA non-coding upstream 42031 12557927 ~ 12560086 (+)
G1708313 NA non-coding upstream 45757 12556038 ~ 12556360 (+)
G1708308 NA non-coding upstream 52163 12549696 ~ 12549954 (+)
G1708304 NA non-coding upstream 57770 12544111 ~ 12544347 (+)
G1708338 NA non-coding downstream 2754 12606165 ~ 12607242 (+)
G1708353 NA non-coding downstream 23546 12626957 ~ 12627207 (+)
G1708370 NA non-coding downstream 54595 12658006 ~ 12658650 (+)
G1708410 NA non-coding downstream 109586 12712997 ~ 12732942 (+)
G1708413 NA non-coding downstream 112750 12716161 ~ 12716917 (+)
G1708323 NA other upstream 17961 12578608 ~ 12584156 (+)
G1708014 NA other upstream 351993 12248028 ~ 12250124 (+)
G1707772 LOC106576513 other upstream 737544 11863662 ~ 11864573 (+)
G1707462 NA other upstream 947494 11653901 ~ 11654623 (+)
G1707493 LOC106609754 other upstream 1033161 11568429 ~ 11568956 (+)
G1708367 NA other downstream 46275 12649686 ~ 12651577 (+)
G1708495 NA other downstream 180796 12784207 ~ 12785502 (+)
G1708635 NA other downstream 348274 12951685 ~ 12952515 (+)
LOC110490642 LOC106597584 other downstream 449122 13051847 ~ 13058457 (+)

Expression


Co-expression Network