G1708683


Basic Information

Item Value
gene id G1708683
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 13074929 ~ 13079923 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1957275
TCAAGTTCATTCAATTTTATTATGCAATACTGTTCACTTATCCTCCagtgtattttttatatatttcaaATCATAAAACTGAGCTAGTGTGATCATGAGTAATCATATGGATTCATGAGTAACATTCACCCAATCAGGGTACAAAATAAAACAGCATTAGGATCAGACAGGGGAAGGGTGCGTTCTTATTGTGCTGTCTGCACCCCTGTAAACTGGAGACATGATTACACATCTGTCCCGTGTAAAATACGGTCAAATGAAGCAGGTATAACACATTTTCAAATTTGTGAAAATAAACAAACACCTGGTAGGGTAGGCGTACCAAGGATTGGTCACAACAGATTAGAAAGTGCTTGACGGATCCCTTACAACAGAGGACAACACAGAAAATGTCTGATAAAACTGCAGTTCCTCACAATAAAATGACAGCTCTTAAGATTGTTAAAAAAAGACCAGCTCAACACGACATTAAAACGAATCATTTTGAGCCGATAGGAACTCCAGGTCCAATTCATTAAGGCAGGCCTTTGAAGGCGTTAGAAAAGTCCCTAGTTGTGGATCTCATCAAGGAGTTAGTCCAAAGTGTCTCAGTGTGGCTTTGTGTAAAGACATCGACCTGAGTgcgtgtgggggtgtgtgtgggggtgtgtgttgtGGCAGACAGGTCTATGCGTCACTAGGCTGGCTGGTCCAGGGAGTTCTTATACCAAACTACCTTATTGGGATCCATCACTGTTTCGTATCTCCTCACTGTCTCTGGCCTTCTGATGCTCTAACTTTCTTCCTGTAGGACCTTCCTCTCCATCTAAGACCTCTGAAAGTATAACAAAAAAAATCAGTTCACTCATAAttcacaaacaggacaaacatTTATATCAACATCAGTTA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106576586

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1957275 True 888 lncRNA 0.41 2 13074929 13079923

Neighbor

gene id symbol gene type direction distance location
LOC110490647 LOC106576589 coding upstream 560 13070036 ~ 13074369 (+)
LOC110518396 LOC106609712 coding upstream 8135 13058705 ~ 13066794 (+)
LOC110490642 LOC106597584 coding upstream 16472 13051847 ~ 13058457 (+)
LOC110490636 LOC106576583 coding upstream 23433 13037232 ~ 13051496 (+)
LOC110490630 LOC106609716 coding upstream 40714 13015166 ~ 13034215 (+)
LOC110490653 ctrb coding downstream 147875 13227798 ~ 13229394 (+)
LOC118942887 NA coding downstream 151152 13231075 ~ 13231826 (+)
LOC110500963 LOC106609744 coding downstream 618594 13698517 ~ 13725137 (+)
crp crp coding downstream 659135 13739058 ~ 13748205 (+)
LOC110499758 osbpl8 coding downstream 715056 13794979 ~ 13950916 (+)
G1708674 NA non-coding upstream 75220 12999450 ~ 12999709 (+)
G1708652 NA non-coding upstream 92160 12982489 ~ 12982769 (+)
G1708651 NA non-coding upstream 92725 12981778 ~ 12982204 (+)
G1708650 NA non-coding upstream 95581 12979131 ~ 12979348 (+)
G1708646 NA non-coding upstream 110160 12964541 ~ 12964769 (+)
G1708695 LOC106576586 non-coding downstream 3870 13083793 ~ 13085231 (+)
G1708701 NA non-coding downstream 19071 13098994 ~ 13099601 (+)
G1708712 NA non-coding downstream 37808 13117731 ~ 13118685 (+)
G1708730 NA non-coding downstream 67347 13147270 ~ 13147502 (+)
G1708732 NA non-coding downstream 69455 13149378 ~ 13149701 (+)
G1708635 NA other upstream 122414 12951685 ~ 12952515 (+)
LOC110490810 LOC106576597 other upstream 261201 12745000 ~ 12825754 (+)
G1708495 NA other upstream 289427 12784207 ~ 12785502 (+)
G1708367 NA other upstream 423352 12649686 ~ 12651577 (+)
G1708702 NA other downstream 19918 13099841 ~ 13101833 (+)
G1709276 zdhhc17 other downstream 676263 13756186 ~ 13765456 (+)
G1709592 NA other downstream 985926 14065849 ~ 14066683 (+)
LOC118942889 LOC106609776 other downstream 1454460 14533785 ~ 14548855 (+)

Expression


Co-expression Network