G1708827


Basic Information

Item Value
gene id G1708827
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 13377845 ~ 13402223 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1957440
cataaagatataaaactgtattttttggggaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagcccctttactttcagtgcagcaaactctctccagaagttcagtgaggatctctgaatgatccaatgttgacctaaatgactaatgatgataaatacaatccacctgtgtgtaatcaagtctccgtataaatgcacctgcactgtgatagtctcagagGCTGTCTCTTATACAC

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1957440 True 315 lncRNA 0.37 2 13377845 13402223

Neighbor

gene id symbol gene type direction distance location
LOC118942887 NA coding upstream 146019 13231075 ~ 13231826 (+)
LOC110490653 ctrb coding upstream 148451 13227798 ~ 13229394 (+)
LOC110490647 LOC106576589 coding upstream 303476 13070036 ~ 13074369 (+)
LOC110518396 LOC106609712 coding upstream 311051 13058705 ~ 13066794 (+)
LOC110490642 LOC106597584 coding upstream 319388 13051847 ~ 13058457 (+)
LOC110500963 LOC106609744 coding downstream 296294 13698517 ~ 13725137 (+)
crp crp coding downstream 336835 13739058 ~ 13748205 (+)
LOC110499758 osbpl8 coding downstream 392756 13794979 ~ 13950916 (+)
LOC110516615 LOC106576514 coding downstream 585009 13987232 ~ 14007450 (+)
LOC118943011 NA coding downstream 595973 13998196 ~ 13998336 (+)
G1708762 NA non-coding upstream 151070 13226452 ~ 13226775 (+)
G1708761 NA non-coding upstream 157135 13219975 ~ 13220710 (+)
G1708753 NA non-coding upstream 180632 13196916 ~ 13197213 (+)
G1708736 NA non-coding upstream 223229 13154298 ~ 13154616 (+)
G1708734 NA non-coding upstream 226104 13151536 ~ 13151741 (+)
G1708840 NA non-coding downstream 2617 13404840 ~ 13405199 (+)
G1708841 NA non-coding downstream 4193 13406416 ~ 13406651 (+)
G1708844 NA non-coding downstream 16255 13418478 ~ 13418693 (+)
G1708846 NA non-coding downstream 20759 13422982 ~ 13423183 (+)
G1708848 NA non-coding downstream 23447 13425670 ~ 13425940 (+)
G1708702 NA other upstream 276012 13099841 ~ 13101833 (+)
G1708635 NA other upstream 425330 12951685 ~ 12952515 (+)
LOC110490810 LOC106576597 other upstream 564117 12745000 ~ 12825754 (+)
G1708495 NA other upstream 592343 12784207 ~ 12785502 (+)
G1709276 zdhhc17 other downstream 353963 13756186 ~ 13765456 (+)
G1709592 NA other downstream 663626 14065849 ~ 14066683 (+)
LOC118942889 LOC106609776 other downstream 1132160 14533785 ~ 14548855 (+)
G1709824 NA other downstream 1253464 14655687 ~ 14657284 (+)

Expression


Co-expression Network