G1709276 (zdhhc17)


Basic Information

Item Value
gene id G1709276
gene name zdhhc17
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 13756186 ~ 13765456 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1957974
GGCAACCTCACCCAACTCTACTTGCCATTTCATAACAAAATGGTGGTGCATTGGTTAGTAGTATCGGCATGATGGCTAGTGCCAGCGTCATGGGCGGTACACGCGTCATGGGCGGTGCCCGCGCCATGGGCAGTGCCCGCGCCATGGGTAGTGCCCGCGTCATGGGTAGTGCCCGCGTCATGGGTAGTGCCAGCGTCATGGGTAGTGCCAGCGTCATGGGTAGTGCCAGCGTCATGGGTAGTGCCAGCGTTTACCTTTTTCTTCTGCTCCTCTGAGGCTTTGATGATCCCGGGGTCTGATTTCCAGGACTTGCCGAAGTTGTAGAACAGACAGACACTGTTCAGGAGGAAAGGCAGGTGGACGGTGGCAAACGGGAGATCAATCCAGAACCAGTAGAACCAGGTCACGTACATCCAGAACTTGGTTGCCAGGTAGATTCCCAGGGGCAGGGCGCTGTGCATGGAGTGGTCAAAGAAAGac

Function

symbol description
zdhhc17 Predicted to enable palmitoyltransferase activity. Acts upstream of or within axonogenesis. Predicted to be located in several cellular components, including Golgi apparatus; cytoplasmic vesicle membrane; and presynaptic membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi membrane. Is expressed in nervous system and spinal cord. Orthologous to human ZDHHC17 (zinc finger DHHC-type palmitoyltransferase 17).

NR:

description
palmitoyltransferase ZDHHC17

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1957974 True 480 TUCP 0.56 3 13756186 13765456

Neighbor

gene id symbol gene type direction distance location
crp crp coding upstream 7981 13739058 ~ 13748205 (+)
LOC110500963 LOC106609744 coding upstream 31049 13698517 ~ 13725137 (+)
LOC118942887 NA coding upstream 524360 13231075 ~ 13231826 (+)
LOC110490653 ctrb coding upstream 526792 13227798 ~ 13229394 (+)
LOC110490647 LOC106576589 coding upstream 681817 13070036 ~ 13074369 (+)
LOC110499758 osbpl8 coding downstream 29523 13794979 ~ 13950916 (+)
LOC110516615 LOC106576514 coding downstream 221776 13987232 ~ 14007450 (+)
LOC118943011 NA coding downstream 232740 13998196 ~ 13998336 (+)
LOC118943020 NA coding downstream 237486 14002942 ~ 14003071 (+)
LOC110499761 LOC106597692 coding downstream 248316 14013772 ~ 14016243 (+)
G1709273 NA non-coding upstream 3344 13752144 ~ 13752842 (+)
G1709268 NA non-coding upstream 4895 13748335 ~ 13751291 (+)
G1709262 NA non-coding upstream 33857 13722072 ~ 13722329 (+)
G1709252 NA non-coding upstream 39162 13714682 ~ 13717024 (+)
G1709286 NA non-coding downstream 5227 13770683 ~ 13771339 (+)
G1709320 NA non-coding downstream 62476 13827932 ~ 13828788 (+)
G1709322 NA non-coding downstream 70913 13836369 ~ 13836910 (+)
G1709323 NA non-coding downstream 71219 13836675 ~ 13837221 (+)
G1709333 NA non-coding downstream 99582 13865038 ~ 13867304 (+)
G1708702 NA other upstream 654353 13099841 ~ 13101833 (+)
LOC110490642 LOC106597584 other upstream 702217 13051847 ~ 13058457 (+)
G1708635 NA other upstream 803671 12951685 ~ 12952515 (+)
LOC110490810 LOC106576597 other upstream 942458 12745000 ~ 12825754 (+)
G1708495 NA other upstream 970684 12784207 ~ 12785502 (+)
G1709592 NA other downstream 300393 14065849 ~ 14066683 (+)
LOC118942889 LOC106609776 other downstream 768927 14533785 ~ 14548855 (+)
G1709824 NA other downstream 890231 14655687 ~ 14657284 (+)
G1709840 NA other downstream 914026 14679482 ~ 14682208 (+)

Expression


Co-expression Network