G1709632 (LOC106609788)


Basic Information

Item Value
gene id G1709632
gene name LOC106609788
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 14148982 ~ 14257172 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1958400
GATAATAATGGCAGACAATGTAGGGAAGTGAGATAATAATGGCAGACAATGTAGGGAAGTGAGATAATAATGGCAGACAATGTAGGGAAGTGAGATAATGGCAGACAATGTAGGGAAGTGAGGTAAAAATGGTTGACAATGTAAGGAAGTGATGCAATAATGGTAGATAATGTAGGAAAGTGATGTAATAATGGTAGACAATGTAGGGAAGTGATGTAATAGAGGTTAACAATGTAGGGAAGTGAGGTAATAATGGCAGACAATGTAGGGAAGTGAGATAATAATGGCAGACAATGTAGGGAAGTGAGATAATAATGGCAGACAATGTAGGGAAGTGAGATAATA
>TU1958391
ggtctgaatactttccgaatgcactgtaagtgccttgctcaagggaacatcaaaatatttttcacatagtaagctcagggatttgaaccagcaacctttcggtaactggcccaGTGCTCTTAActgttaggctacctgccacccttatGACAGATTTGTAACATGCTATGTTCCTGCTCCACAATGTTTGTTTTGATCCTTCTCAAGTTGAGTGCAGTGTACTTAATAGTATATAGGTGAGCAGGTGTTGTAGCCATGCTCACCTCCTCATAAGGGTGCTCTCTAGTGGGCCTCTGAGTAGGGAAGGACAGATCCATGAAGTCCACCAGATAGTTGTAGCCATTGGCTATCGGAATGAAGTCCTCATCTGTCTCTATGACCTTAAATACATATTACAAACAGTTAGGCTATGTTTAGTTGGAATTCAAACAATTTGCGTTATTCACTGACCTGCAGTTATGATAAATACCAGATAACTAGAATATGAATAACCAGAATAACCAGAATCAATAAACAGAATCTAAAGAATTACCAGAATCTTAAAAGAAAGTAGCAAAAGAATGAGAAGAATTGGAAAAGATTTGTTCTAATTTCAACCCTCGAACCCACTAGATTTgggttaaaaatatttttttatttttcaaattgattgaacatgcctggcacaatggaaccaagGGTCATAGTCCCTAGAGTGTCAAGCCTGCCCATCTGGCAATCCAAGCAGCCAAAATCAGCTGTTCCAAGGGCAGTTTCCTGGacattaagcctagtcctggaacCCCCCAAAAATTCGatagagattctccattgagcttttaatttttttaaattcaggAATAGGCTTAGTCTGTGTCCGTGAGAGCGTCCGTACATGTTTTAAACATTCCAGAAATctgcagagagaggaagtgaatgGAAGGGGTCGCGTTCAGTCGGTACAAAACCTAGAAACTTTTTAAAATTGAGATTGTCCAATAATATTTAAAATTTTCCTTGCATGTTTTACTGCCTACTGAATGCGAGTCAGGAGTAACCAGGAGTGTATTCCTAAATTGCAGACTGTTGCAAAAAAGTTTAGTCCGTTTAatccaaacaaaaaacattttgcaatgaaaacaagtttctattggacaaattcaggctTCCGTTTGGTTCCAAGAGTAAACAGTAATCGGTTTCTGTTgaaaaaacgttttgcaacagtcTGCGACTAATGAATCCACCCCAGGAGTCAGCTTGTAGATGTGCAGTAGAGCACTAAGAGCTGTGAGGACTTTTATATGGACTGCAATATTTACCCGGACAACTAGATTGTAGTTTTTAAACCCTGCCCAGATGTAATAAAATTGGATCCAGCTTTTATGTTTAAATATCTCAGCGGTGATGGCCCTGTTCAGTTCATCCACGTACAAATCAAAGTCCCAACTGTCCTTATAGATGTTTGTCCCGGATGGAGGGTCGGTGATGGCTTTCCTGTGGTTATAGTCAAATCATACATGATTTACAGTGCATTTTACCTGGGTTACAACATTAAAACGGAATTCAATGATGTAGGAAAAACCGAATGTAGAAAGAGAACATAATGGCAGACAATGTAGGGAAGTGAGGTAATAATGGCAGACAATGTAGGGAAGTGAGATAATAATGGCAGACAATGTAGGGAAGTGAGGTAAAAATGGTTGACAATGTAAGGAAGTGATGCAATAATGGTAGATAATGTAGGAAAGTGATGTAATAATGGTAGACAATGTAGGGAATGATATAATAATGGCAGACAATGTAGGGAAGTGAGGTAAAAATGGTTGACAATGTAAGGAAGTGATGCAATAATGGTAGATAATGTAGGAAAGTGATGTAATAATGGTAGACAATGTAGGGAAGTGATGTAATAGAGGTTAACAATGTAGGGAAGTGAGGTAATAATGGTATTGACAACAGAGGGAAACATCAAACACTAAAATGTGATTTGTGATTATTGATGATTGTTGGCATTTCTATGGAGTATGGACTGATATgacagacatggacacacacacgatTTGCTGATTGATGAGCAATCCTACCGGCTGGGGCTCATCAGAGCCAGTGCCAGATCGAGCACAGCGCCTGGCTTGGGTGTCCATGTTGTTATGCCTGGAGCGCTCTTCTTGATCAGGGCATTGAGCTCCTCCGCTTTGTTTTTCGTGTTAGTTTCCTTAATGTACCTGTCAGTTAACTTATGTCAGTTGTCAATGTCAAATTGGGATGCAAGTTATATTGAGTGACTGCAATTGAAGCAATAAGAGGGGTCAAaacctaacctcaacctagaaCGGAATTTGTACACAAAAGAGTAAACGTTTTGTAATACCTGTCTGAGGGATGTGCTTCGACAAAGTAACCGGCAAACGGGCAGTAGATCTTGGGCTGCAAGGATTTTACCAGCTGGGTCTTGTAGTTCATGAGCTTCTTCCTTTCATTCTTGATGAAATCAGCTTTCCAGCTCTCTGCAGGGTGAAATCGACACTAGTCAATGAGTGAATCTCAGTTGTGTTTCCTTGATTCCTCGCTTCCTC

Function

NR:

description
cytidine monophosphate-N-acetylneuraminic acid hydroxylase-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1958400 False 345 lncRNA 0.37 2 14148982 14179376
TU1958391 True 2558 lncRNA 0.40 4 14177668 14257172

Neighbor

gene id symbol gene type direction distance location
LOC110499766 LOC106576530 coding upstream 21396 14116546 ~ 14127586 (+)
LOC110500967 LOC106609789 coding upstream 33187 14103817 ~ 14115795 (+)
LOC118942888 NA coding upstream 130672 14017709 ~ 14018310 (+)
LOC110499761 LOC106597692 coding upstream 132739 14013772 ~ 14016243 (+)
LOC118943020 NA coding upstream 145911 14002942 ~ 14003071 (+)
LOC110499776 LOC106609772 coding downstream 24880 14282052 ~ 14288120 (+)
LOC110499784 kcnc2 coding downstream 38795 14295967 ~ 14378043 (+)
LOC110499786 pmpcb coding downstream 221083 14478255 ~ 14482429 (+)
LOC110499788 psmc2 coding downstream 231246 14488418 ~ 14493003 (+)
LOC110499790 tspan33 coding downstream 257247 14514419 ~ 14533522 (+)
G1709607 NA non-coding upstream 69975 14078794 ~ 14079007 (+)
G1709594 NA non-coding upstream 81455 14067141 ~ 14067527 (+)
G1709584 NA non-coding upstream 87858 14060794 ~ 14061124 (+)
G1709580 NA non-coding upstream 89766 14058943 ~ 14059216 (+)
G1709686 NA non-coding downstream 9984 14267156 ~ 14267380 (+)
G1709688 NA non-coding downstream 11164 14268336 ~ 14268661 (+)
G1709690 NA non-coding downstream 12273 14269445 ~ 14269670 (+)
G1709708 NA non-coding downstream 51455 14308627 ~ 14308994 (+)
G1709735 NA non-coding downstream 133111 14390283 ~ 14391796 (+)
G1709592 NA other upstream 82299 14065849 ~ 14066683 (+)
LOC110499758 osbpl8 other upstream 198066 13794979 ~ 13950916 (+)
G1709276 zdhhc17 other upstream 383526 13756186 ~ 13765456 (+)
G1708702 NA other upstream 1047149 13099841 ~ 13101833 (+)
LOC110490642 LOC106597584 other upstream 1095013 13051847 ~ 13058457 (+)
LOC118942889 LOC106609776 other downstream 277211 14533785 ~ 14548855 (+)
G1709824 NA other downstream 398515 14655687 ~ 14657284 (+)
G1709840 NA other downstream 422310 14679482 ~ 14682208 (+)
G1710321 NA other downstream 875960 15133132 ~ 15133588 (+)
LOC110499821 LOC106609608 other downstream 1221976 15462544 ~ 15700037 (+)

Expression


Co-expression Network