G1709767


Basic Information

Item Value
gene id G1709767
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 14494904 ~ 14495399 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1958581
aggccagtccatagcagcaatgccttcctcttgcaggaaccgctgacacactccagccacatgaggtctagcattgtcttgcattaggaggaacccacggccaaccgcaccagcatatggtctcacaaggggtctgaggatctcatctcggtacctaatggcagtcaggctacctctggcgagcacatggagggctgtgcggccccccagagaaatgccaccccacaccatgactgacccaccgccaaaccggtcatgctggaggatgttgcaggcagcagaacgttctccactgcgtctccagactgtcacatgtgctcagtgtgaacctgctttcatctgtgaagggcgccagtggcgaatttgccgaTCTTGgggttctctggcaaatgccaaacatcctgcacggtgttaggctgtaagcacaacccccacccgtggatgtcgggccctcataccaccctcatggagtctgtttctgaccgtttgagcagac

Function

NR:

description
transposase

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1958581 True 496 lncRNA 0.57 1 14494904 14495399

Neighbor

gene id symbol gene type direction distance location
LOC110499788 psmc2 coding upstream 1901 14488418 ~ 14493003 (+)
LOC110499786 pmpcb coding upstream 12475 14478255 ~ 14482429 (+)
LOC110499784 kcnc2 coding upstream 116861 14295967 ~ 14378043 (+)
LOC110499776 LOC106609772 coding upstream 206784 14282052 ~ 14288120 (+)
LOC110499766 LOC106576530 coding upstream 367318 14116546 ~ 14127586 (+)
LOC110499790 tspan33 coding downstream 19020 14514419 ~ 14533522 (+)
LOC118942889 LOC106609776 coding downstream 38386 14533785 ~ 14548855 (+)
LOC110490791 LOC106609779 coding downstream 54118 14549517 ~ 14565204 (+)
LOC110519829 zc3hc1 coding downstream 92161 14587560 ~ 14596988 (+)
LOC110490612 ube2h coding downstream 104681 14600080 ~ 14631285 (+)
G1709761 NA non-coding upstream 30018 14464663 ~ 14464886 (+)
G1709755 NA non-coding upstream 47029 14447612 ~ 14447875 (+)
G1709756 NA non-coding upstream 47372 14446012 ~ 14447532 (+)
G1709751 NA non-coding upstream 54745 14430220 ~ 14440159 (+)
G1709752 NA non-coding upstream 60441 14430452 ~ 14434463 (+)
G1709776 NA non-coding downstream 12921 14508320 ~ 14523155 (+)
G1709793 NA non-coding downstream 21293 14516692 ~ 14518026 (+)
G1709797 NA non-coding downstream 27987 14523386 ~ 14523944 (+)
G1709800 NA non-coding downstream 70303 14565702 ~ 14567845 (+)
G1709592 NA other upstream 428221 14065849 ~ 14066683 (+)
LOC110499758 osbpl8 other upstream 543988 13794979 ~ 13950916 (+)
G1709276 zdhhc17 other upstream 729448 13756186 ~ 13765456 (+)
G1708702 NA other upstream 1393071 13099841 ~ 13101833 (+)
LOC110490642 LOC106597584 other upstream 1440935 13051847 ~ 13058457 (+)
G1709824 NA other downstream 160288 14655687 ~ 14657284 (+)
G1709840 NA other downstream 184083 14679482 ~ 14682208 (+)
G1710321 NA other downstream 637733 15133132 ~ 15133588 (+)
LOC110499821 LOC106609608 other downstream 983749 15462544 ~ 15700037 (+)

Expression


Co-expression Network