XLOC_003654


Basic Information

Item Value
gene id XLOC_003654
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 39373712 ~ 39479267 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008418
TCAGAGACGACAGAGCATCTGCCGTTGCGGTTTCCCAGTTTTTTTGAACTCGCCATCTGAACCTTGACCTCCATCATAACCTTGGCTCAGAGAAACAGCGATGCAACGCTTCCTGATTGATAGGAGAAAAAGCTCCCCCTCCTCAAAAAGAAGAGAGACTTTTAAAGGAATCCCCCATAGCGAAAATGTGATGTGAGCAATTTCTCACCTCAAGCTGCTTTCGGTGAATGTGTGCATTAGCGTGAGAGCTTTCTCCACACTTCTGCTTAAGTGTGAGTCTAATAGCCGTGTACACACTGATGCTGCTTCTGCAAACCCTCACACTTTACTACATCATACAGCGGTTTGGCAGcacaaaaatgcatatttttctctctctttattttcttttctgtgtTTATTAAATGAACAGATATGTTTTTGATATAACGCTAACATTTTAACTTAACGTCTGATGAGTtccaattaaataaacagaataaactcCCTCTGGATGTAAATACTCTCACAGAT
>TCONS_00008671
GACAGAGCATCTGCCGTTGCGGTTTCCCAGTTTTTTTGAACTCGCCATCTGAACCTTGACCTCCATCATAACCTTGAATCTGTCACAATATCTATATTTAATTGGGTTTTATCATTTGCATATGTAGACCAGAGCAGCTAAACAAACAACCAGCATCCCACTAGCATGAAGCAGACGGATAAACACACACAGGTGTGACAGCTGACCTTAATAAGCCCTCTTGGAGTCTGACCTCCACATCCAGGCCTGTCCTGTGAACACAACTGAGATGGTGCTCCCGACAGCTGTTTTTATATCGGCTCTGAGCTCTGCAATCACGTACATGTGGCTAGCTCGACAGGTGCGCTATGATGTGAACAGGATTCAAGGGCGGCTCATTGGTACGACAGCAAGCGTGTGCTCTTTTGTAAGGGTTCAGGTAGCCAGGGAGGGTTCACCACAGTCGTTTTTGGCAAAGCAACAACATTTTGTCACCATGCATTATTTTAGGAAAATGAAGTGTTAGTACAGTGCAGCCCAGGCCATGTTCCTCTGCTGACTTTATTAATCCAAGAACATCTGTGTTAAAAACCCCACTGATGTCATTCACCATCGTGTTTAATTAAGAGCGGTTAATTGCAGAACTTAAATCAGTGGAGTCCTAAATTATGCTTTCCGACATTGCTGATTATTGCTAATTATGTTTTGAACACAGTTTATCAGATTTGCTGGTTCTGAATGGACATAGTTTCATAGTCAAATAGCAAG

Function

GO:

id name namespace
GO:0034440 lipid oxidation biological_process
GO:0006635 fatty acid beta-oxidation biological_process
GO:0046031 ADP metabolic process biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0006096 glycolytic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:0019395 fatty acid oxidation biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0032787 monocarboxylic acid metabolic process biological_process
GO:0016042 lipid catabolic process biological_process
GO:0016052 carbohydrate catabolic process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008418 False 513 lncRNA 0.41 2 39373712 39479267
TCONS_00008671 True 747 lncRNA 0.44 2 39373720 39377087

Neighbor

gene id symbol gene type direction distance location
XLOC_003653 NA coding upstream 83078 39287369 ~ 39290634 (+)
XLOC_003652 NA coding upstream 89736 39262536 ~ 39283976 (+)
XLOC_003651 NA coding upstream 92821 39187531 ~ 39280891 (+)
XLOC_003650 NA coding upstream 221732 39148404 ~ 39151980 (+)
XLOC_003649 cdc42 coding upstream 225513 39120306 ~ 39148199 (+)
XLOC_003655 NA coding downstream 97274 39576541 ~ 39926872 (+)
XLOC_003656 vamp3 coding downstream 449561 39928828 ~ 39956925 (+)
XLOC_003657 per3 coding downstream 479772 39959039 ~ 40021080 (+)
XLOC_003658 si:dkey-264d12.1 coding downstream 553523 40032790 ~ 40072301 (+)
XLOC_003659 NA coding downstream 632214 40111481 ~ 40116646 (+)
XLOC_003369 CR854846.2 misc upstream 23250630 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 26661716 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 26679449 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 26688113 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 26693684 12679732 ~ 12680028 (+)
XLOC_003647 CU210919.1 non-coding upstream 290669 39077610 ~ 39083043 (+)
XLOC_003662 NA non-coding downstream 740788 40220055 ~ 40434080 (+)
XLOC_003669 NA non-coding downstream 1385688 40864955 ~ 40865542 (+)
XLOC_003670 CABZ01044767.1 non-coding downstream 1409913 40889180 ~ 40889294 (+)

Expression


Co-expression Network