G1710361 (plxna4)


Basic Information

Item Value
gene id G1710361
gene name plxna4
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 15261765 ~ 15262821 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1959334
CCTTCACACAGCCCAGTGGTACCTCCACATACGAGTTAAAGGCTGTGTCGTCTTTACACAGCCGGACTATTTTAGAAGTGTACACCTGTTCTCGTCCCGTGGAGGAGGAGCCGGTGGCCGGCCCGTTCCCCATCTCCGGCTGCAGCGTGAGGAAGTAGACAAAGTTACCCGAGCCAAATCCGTAGACGTAGTAGATGTCAAAGTCAGGCACAATGGTGAACGTGTCTGACGGGATCTTGATCATGGATGCCACAAACTCGTCGTGGAAGACGTAGGCGAACATGCCGTCCTCCTCCGAGTTGCGCGCCAGCTTGCGGCTGGAGATGGTGGGGAAATACTCGGGTTTGCCGTCCACTGCCGTGGCCACAAACAGCTTGTCGGGCGATGAGTCCCCGTACGACACGATGACGCCGAACACGGAACCGCTCTCGTTGACCCCGGACAGGTAGTGCTCCTTCTTGTGGAAGGGCTCTCCCAGCTTGAACAGGTCGTCCAGACGGAGGAGTTTACAGATGCCCTGATAGAGACTACCACAGGCTAATAGCCGGTTCTCCCGGTAGTCCATCAGCAGCATCTTGTTGACGTTGTTGGTGAGGGACAGCGGCTCGCTGCAGGGCTGCACAATGCGTGGCGGGTAGCACTTGCGGTTGTCCTCGTCGGGGCCAGTCTCGTGATACACCTGTACGTTTAGGTCGGGGGAGAGTTTGTAGATGCGGTTGACCGCTCCCAGGTACACGTTGCCGTTGCGTTCGTCCACGGCCACGTGGTTGAACTTCCACTCAGGGTTCTCGGTGCTGAACGTGCTATAGTCCTCCTCCTCAGCTGCGTCAATGGAGGCAGTGATGATAGTGACGCCGTCGGGGGCATGGGGGAGGGGCCTGGATGCCAACAAGAGAGGGATGTCCAGGGCAAACAGGAAGCAGCATAGGGTAAGACAGGAAGTCCGTGTCCTGGTGTGGTGGGACTCCATGGTCCGCGGTATCAGGAATGGCTAGAAGGGGCTCGGTCCAGTACTCTCAGCCAATCCGTGATCAGGCCTCTCTTGGGATCGAGGTCA

Function

symbol description
plxna4 Predicted to enable semaphorin receptor activity. Acts upstream of or within axon guidance; axonal defasciculation; and morphogenesis of a branching structure. Predicted to be integral component of membrane. Predicted to be part of semaphorin receptor complex. Predicted to be integral component of plasma membrane. Is expressed in several structures, including basal plate midbrain region; nervous system; optic vesicle; presumptive neural retina; and trigeminal placode. Orthologous to human PLXNA4 (plexin A4).

NR:

description
plexin-A4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1959334 True 1057 lncRNA 0.58 1 15261765 15262821

Neighbor

gene id symbol gene type direction distance location
LOC110490612 ube2h coding upstream 630480 14600080 ~ 14631285 (+)
LOC110519829 zc3hc1 coding upstream 664777 14587560 ~ 14596988 (+)
LOC110490791 LOC106609779 coding upstream 696561 14549517 ~ 14565204 (+)
LOC118942889 LOC106609776 coding upstream 712910 14533785 ~ 14548855 (+)
LOC110499790 tspan33 coding upstream 728243 14514419 ~ 14533522 (+)
LOC118942891 NA coding downstream 84619 15347098 ~ 15356958 (+)
LOC110499821 LOC106609608 coding downstream 199723 15462544 ~ 15700037 (+)
LOC110500994 LOC106609603 coding downstream 437798 15700619 ~ 15737550 (+)
col7a1l LOC106576558 coding downstream 516754 15779575 ~ 15866718 (+)
LOC110490786 LOC106576567 coding downstream 607369 15870190 ~ 15889111 (+)
G1710356 NA non-coding upstream 19940 15241545 ~ 15241825 (+)
G1710353 NA non-coding upstream 29935 15231620 ~ 15231830 (+)
G1710350 NA non-coding upstream 40437 15220586 ~ 15221328 (+)
G1710346 NA non-coding upstream 58439 15203026 ~ 15203326 (+)
G1710341 NA non-coding upstream 70257 15191210 ~ 15191508 (+)
G1710344 NA non-coding downstream 17126 15279947 ~ 15283240 (+)
G1710367 NA non-coding downstream 38310 15301131 ~ 15301414 (+)
G1710603 NA non-coding downstream 49263 15312084 ~ 15312294 (+)
G1710606 NA non-coding downstream 51010 15313831 ~ 15314234 (+)
G1710619 NA non-coding downstream 73803 15336624 ~ 15336869 (+)
G1710321 NA other upstream 128177 15133132 ~ 15133588 (+)
G1709840 NA other upstream 579557 14679482 ~ 14682208 (+)
G1709824 NA other upstream 604481 14655687 ~ 14657284 (+)
G1709592 NA other upstream 1195082 14065849 ~ 14066683 (+)
G1710901 mest other downstream 668277 15931098 ~ 15936421 (+)
LOC110499847 LOC106609634 other downstream 1262756 16318043 ~ 16528816 (+)
G1711795 NA other downstream 1457099 16719920 ~ 16720552 (+)

Expression


Co-expression Network