G1710901 (mest)


Basic Information

Item Value
gene id G1710901
gene name mest
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 15931098 ~ 15936421 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1960067
GGAAACGTATGTGAGAACACAGGCATGTACCCTTTAGAGAACACCATGTAGTTGGTCAGACGGGTCAGCACTGGAGAGAGGAAGCTGGAGTCCTTGAGGAGCTTCTGAAGGAATCTGGGATGGTGTGTTTCTGGGAATATTCCTGTTcaagaaaaaatgttttttttacttaGATTAAATATTTCATAATCAAACATGGCAAGTTAACAGTAAGACAAAGGCTATCAAAACAATGTGTCACTTTGTCTTGAAGTTCTTGACCGGTAATCTACTTTGTACACATATGAAGTGAGTTTGAGGGGGTAAGAGTTTagggtagggacatcccaaggattccGGATAGCAGGGGTTAAACCAAGGGTGAGCTACTCTGGTACTGATGAGAAGCAGGGTGTGCAGGATTTAGTGAGAAAAATATCCAATTGGGCTGCGTGTGTAAATGCAGTCTTagtaaaaaataatataataataaatcgGACAATACAGGTGAGTTTACAGGTTGTCTGCTACACACAACATATAAATACACAAGTCTTTTCTCCTCACTTCATCAGTACTGTTCATTGGGTGTCATGGCTGCACTTACTGGCTCAGGGTAAGATGGTGGCAAGAGCAATGTTACTTTCATCTGTCTGTAGGTGCCTCCTTGCTTTGCTGAGCTGTTCATTGTTATCCTTATCAACAAGGTAAGAGCAACATTAAAGTACTGTTTGCTTGAATTGTTTTTGGATGTTTTATTTTTATCTGAAGTTAATATTTCGTTTGTTGCTTCCCCAGTTTATACGACCGTCTTTCTCCACCCTCTTCGAGCACGACACTAGTCGTCTATGAGCACGGCACTAGTCGTCTATGAGCACGGCACTAGTCGTCTATGAGAACGGCACTAGTCGTCCATGAGCACGGCACTAGTCGTCTATGAGCACGGCACTAGTCGTCTATGAGCACGGCACTAGTCGTCTATGAGCACGGCACTAGTCGTCCATGAGCACGGCACTAGTCGTCCATGAGCACGGCACTAGTCGTCTATGAGCACGGCACTAGTCGTCTATGAGCACGGCACTAGTCGTCTATGAGCACGGCACTAGTCGTCTATGAGCACGGCACTAGTCGTCTATGAGCACGGCACTAGTCGTCTATGAGAACGGCACTTGTCGTCTATGAGCACGGCACTTGTCGTCTATGAGCACGGCACTAGTCGTCTATGAGAACGGCACTTGTCATCTATGAGCACGGCACTTGTCGTCTATGAGCACGGCacttgctgtttcctgaagtccacgatcatctcctttgttttgttgacgttgaggttattttcctgacaccacactccgagggccctcacctcctccctgtaggccgtctcgtcgttgttggtaatcaagcctaccactgtagtgtcgtctgcaaacttgatgattgagttggaggcatgcatggccacgcagtcgtgggtgaacagggagtacaggagagggctcagaacatacccttgtggggccccagtgttgaggatcaac
>TU1960069
GGAAACGTATGTGAGAACACAGGCATGTACCCTTTAGAGAACACCATGTAGTTGGTCAGACGGGTCAGCACTGGAGAGAGGAAGCTGGAGTCCTTGAGGAGCTTCTGAAGGAATCTGGGATGGTGTGTTTCTGGGAATATTCCTCCATTGGACAAACAGAGGCTGTTGATGGTCAAGTGTCCAGTCCTGTTGTGGTCACTCCTGTAGAGCAGTtccagggccacagtgtctccataGTCATGGGAGAGCAGGTTGACCCTCTGCTCTGTCAGACCCAGGTGGGACACCAACGCCTCCACAACACTGGCCTGCTCAAAGATGGAGTAGCGGTGGGGCCTCTGTCAGGGGGAAAGGTCAGTCTAGGTGAGCACCTTAGCTAGAACAAAATGTGCTTATTTGGATTTTTT

Function

symbol description
mest Predicted to enable catalytic activity. Predicted to be involved in regulation of lipid storage. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human MEST (mesoderm specific transcript).

NR:

description
mesoderm-specific transcript homolog protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1960067 False 1520 lncRNA 0.47 2 15931098 15932717
TU1960069 True 407 TUCP 0.52 4 15931098 15936421

Neighbor

gene id symbol gene type direction distance location
copg2 copg2 coding upstream 7307 15908444 ~ 15923791 (+)
LOC110518420 LOC106593864 coding upstream 25424 15902931 ~ 15905674 (+)
LOC110490786 LOC106576567 coding upstream 41987 15870190 ~ 15889111 (+)
col7a1l LOC106576558 coding upstream 64380 15779575 ~ 15866718 (+)
LOC110500994 LOC106609603 coding upstream 193548 15700619 ~ 15737550 (+)
LOC110499838 LOC106609638 coding downstream 358756 16291473 ~ 16298592 (+)
LOC110499847 LOC106609634 coding downstream 385326 16318043 ~ 16528816 (+)
LOC110499856 LOC106609654 coding downstream 661710 16594427 ~ 16600458 (+)
LOC110499844 LOC106609653 coding downstream 671542 16604259 ~ 16608641 (+)
LOC110499863 tap26 coding downstream 807652 16740369 ~ 16742407 (+)
G1710896 NA non-coding upstream 17391 15912907 ~ 15913707 (+)
G1710890 NA non-coding upstream 40942 15889829 ~ 15890156 (+)
G1710880 NA non-coding upstream 61778 15867646 ~ 15869320 (+)
G1710809 NA non-coding upstream 192617 15683735 ~ 15738481 (+)
G1710907 NA non-coding downstream 13640 15946357 ~ 15946644 (+)
G1710912 LOC105893511 non-coding downstream 26826 15959543 ~ 15960536 (+)
G1710915 LOC106576479 non-coding downstream 30696 15963413 ~ 15966257 (+)
G1710918 NA non-coding downstream 34833 15967550 ~ 15967792 (+)
G1710919 NA non-coding downstream 35229 15967946 ~ 15968237 (+)
LOC110499821 LOC106609608 other upstream 440227 15462544 ~ 15700037 (+)
G1710321 NA other upstream 797510 15133132 ~ 15133588 (+)
G1709840 NA other upstream 1248890 14679482 ~ 14682208 (+)
G1709824 NA other upstream 1273814 14655687 ~ 14657284 (+)
G1711795 NA other downstream 787203 16719920 ~ 16720552 (+)
LOC110501009 LOC105020375 other downstream 981503 16914013 ~ 16973778 (+)
G1712658 NA other downstream 1733563 17666280 ~ 17668586 (+)
G1710813 NA non-coding upstream 236363 15692882 ~ 15694735 (+)

Expression


Co-expression Network