G1711006



Basic Information


Item Value
gene id G1711006
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 16216652 ~ 16217403 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1960199
GAGCATGGCAGTTGGGAGTAGAAGACACATGTTTTAAAACAAAAACGTTTTTATTCTATTCTTGTCTATTCTACTTGGAAAGACCACTTGCTGTCAACTTGGAAAGGTCTATAGAGGATTGGTGTCAACTTGGAAAGGTCTATAGAGGATTGGTGTCAACTTGGAAAGGACTATAGAGGATTGGTGACAACTTGGAAAGGACTATAGAGGATTGGTGACAACTTGGAAAGGTCCATAGAGGATTGGTGACAACTTGGAAAGGACTATAGAGGATTGGTGACAACTTGGAAAGGACTATAGAGGATTGGTGTCAACTTGGAAAGGACTATAGAGGATTGGTGTCAACTTGGAAAGGTCTATAGAGGATTGGTGACAACTTGGAAAGGACTATAGAGGATTGGTGACAACTTGGAAAGGACTATAGAGGATTGCTGCCTCTCAT
>TU1960200
GAGCATGGCAGTTGGGAGTAGAAGACACATGTTTTAAAACAAAAACGTTTTTATTCTATTCTTGTCTATTCTACTTGGAAAGACCACTTGCTGTCAACTTGGAAAGGTCTATAGAGGATTGGTGTCAACTTGGAAAGGTCTATAGAGGATTGGTGTCAACTTGGAAAGGACTATAGAGGATTGGTGACAACTTGGAAAGGACTATAGAGGATTGGTGACAACTTGGAAAGGTCCATAGAGGATTGGTGACAACTTGGAAAGGACTATAGAGGATTGGTGACAACTTGGAAAGGACTATAGAGGATTGGTGTCAACTTGGAAAGGACTATAGAGGATTGGTGTCAACTTGGAAAGGTCTATAGAGGATTGGTGACAACTTGGAAAGGACTATAGAGGATTGGTGACAACTTGGAAAGGACTATAGAGGATTGCTGCCTCTCAT
>TU1960203
GAGCATGGCAGTTGGGAGTAGAAGACACATGTTTTAAAACAAAAACGTTTTTATTCTATTCTTGTCTATTCTACTTGGAAAGACCACTTGCTGTCAACTTGGAAAGGTCTATAGAGGATTGGTGTCAACTTGGAAAGGACTATAGAGGATTGGTGACAACTTGGAAAGGACTATAGAGGATTGGTGACAACTTGGAAAGGTCCATAGAGGATTGGTGACAACTTGGAAAGGACTATAGAGGATTGGTGACAACTTGGAAAGGACTATAGAGGATTGGTGTCAACTTGGAAAGGACTATAGAGGATTGGTGTCAACTTGGAAAGGTCTATAGAGGATTGGTGACAACTTGGAAAGGACTATAGAGGATTGGTGACAACTTGGAAAGGACTATAGAGGATTGCTGCCTCTCAT

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1960199 False 442 lncRNA 0.41 3 16216652 16217403
TU1960200 False 442 lncRNA 0.41 2 16216652 16217403
TU1960203 True 411 lncRNA 0.41 2 16216652 16217403

Neighbor


gene id symbol gene type direction distance location
copg2 copg2 coding upstream 292861 15908444 ~ 15923791 (+)
LOC110518420 LOC106593864 coding upstream 310978 15902931 ~ 15905674 (+)
LOC110490786 LOC106576567 coding upstream 327541 15870190 ~ 15889111 (+)
col7a1l LOC106576558 coding upstream 349934 15779575 ~ 15866718 (+)
LOC110500994 LOC106609603 coding upstream 479102 15700619 ~ 15737550 (+)
LOC110499838 LOC106609638 coding downstream 74070 16291473 ~ 16298592 (+)
LOC110499847 LOC106609634 coding downstream 100640 16318043 ~ 16528816 (+)
LOC110499856 LOC106609654 coding downstream 377024 16594427 ~ 16600458 (+)
LOC110499844 LOC106609653 coding downstream 386856 16604259 ~ 16608641 (+)
LOC110499863 tap26 coding downstream 522966 16740369 ~ 16742407 (+)
G1711004 NA non-coding upstream 5650 16210402 ~ 16211002 (+)
G1710996 NA non-coding upstream 20441 16195912 ~ 16196211 (+)
G1710949 NA non-coding upstream 157581 16058766 ~ 16059071 (+)
G1710948 NA non-coding upstream 182475 16033778 ~ 16034177 (+)
G1710946 NA non-coding upstream 186552 16029774 ~ 16030100 (+)
G1711008 NA non-coding downstream 593 16217996 ~ 16219310 (+)
G1711046 NA non-coding downstream 81738 16299141 ~ 16299885 (+)
G1711051 NA non-coding downstream 90020 16307423 ~ 16307659 (+)
G1711052 NA non-coding downstream 90383 16307786 ~ 16308107 (+)
G1711055 NA non-coding downstream 95521 16312924 ~ 16313184 (+)
G1710901 mest other upstream 280231 15931098 ~ 15936421 (+)
LOC110499821 LOC106609608 other upstream 725781 15462544 ~ 15700037 (+)
G1710321 NA other upstream 1083064 15133132 ~ 15133588 (+)
G1709840 NA other upstream 1534444 14679482 ~ 14682208 (+)
G1711795 NA other downstream 502517 16719920 ~ 16720552 (+)
LOC110501009 LOC105020375 other downstream 696817 16914013 ~ 16973778 (+)
G1712658 NA other downstream 1448877 17666280 ~ 17668586 (+)

Expression



Co-expression Network