G1711809


Basic Information

Item Value
gene id G1711809
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 16766753 ~ 16768908 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1961195
acgcttACTAGCCATTTGTCCCTGGCGAAGATGACCGTATTGAGCATAGACTCGTAGAAGAGACAGTAGCCCATCCACTCTGAGATGATGATGTCTACTTTCTCCACTGGCagttccacctcctccaccttcccATTGAAGATAGTGATGACTGAAGGACAGGACACAGAATGTCACTCACAACACACActccactacactaaacactccaCTCCACCaaacactctactacactaaacactacactacacaaaacactccactccaccaaacactccactacactaaacactccactccactaaacactctactacactaaacactactctacactaaacactccactccactacactaaacactacactacactaaacactccaGTCCACTAAAACACTCTACTACActcaacactacactacacaaaacactccactccaccaaacactccactacactaaacactccactccactaaacactctactacactaaacactctactacactaaacactactctacactaaacactccactccactacactaaacactacactaaacactccaGTCCACTAAAACACTCCACTCCAATAAACACTCCACTCCATTAAACACTACACAAAACACTCCACTCCACcaaacactccactccactaaacactctactacactaaacactccactacactaaacactccactacactaaacactccaCTACACCAAACActctactacactaaacactccaccaaacactctactacactaaacactctactacactaaacactacacaaaacactccactccaccaaacactccactccactacactaaACACTCTACTACACCAAACACTCCAGTACACtaaacactccactccactaaACTAAACACTCCAGTCCACTAAACACTCCAGTCCACTAAACACTCCAGTCCACTAAAACACTCTACTACACTAAAACActctactacactaaacactccactacactaaacactccaGTCCACTAAAACGCTCTACTACACTAAAACActctactacactaaacactccactacactaaacactttactacactaaacactccactccactaaACAATTCACTACACTAAACCCTTCACTACACCAAACActtcactacactaaacacttcACTACACCAAACACtttactacactaaacactacacttcactaaacactctactacactaaacactgcactacactaaacactccaGTACAccaaacagtacactacactacagtaaacacttCACTACACTAAACATTTCACTCCTCTAAACACTCCACTACACCAAACGCTCCACTACACTAAACGCTCCACTACACTAAAGACTCCACTATACTAAAGACTccagtacacaacacaacaccccaCTACACCAAACACTGCACTCCACTACACCAAACACTCCACTacaacaaaaatatattctaAATGTTAGAATAACATTGATCAAGTGTCAATGTTCCACTTTTTGTTCTGGGTCATTCAGTTAGATGTCCATCTGTGGAGTTCCATCAATGTGACATTTCAGAGTGGTGATCAGTGACATACAGCTCATTC

Function

NR:

description
protein arginine N-methyltransferase 8-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1961195 True 1605 lncRNA 0.42 3 16766753 16768908

Neighbor

gene id symbol gene type direction distance location
LOC110499861 LOC106609625 coding upstream 7976 16742795 ~ 16758777 (+)
LOC110499863 tap26 coding upstream 24354 16740369 ~ 16742407 (+)
LOC110499844 LOC106609653 coding upstream 158112 16604259 ~ 16608641 (+)
LOC110499856 LOC106609654 coding upstream 166295 16594427 ~ 16600458 (+)
LOC110499847 LOC106609634 coding upstream 240347 16318043 ~ 16528816 (+)
LOC110501009 LOC105020375 coding downstream 145105 16914013 ~ 16973778 (+)
LOC110516649 LOC106609628 coding downstream 233509 17002417 ~ 17063380 (+)
LOC110499865 LOC106576572 coding downstream 320061 17088969 ~ 17247292 (+)
LOC110501011 LOC105020379 coding downstream 503097 17272005 ~ 17319991 (+)
LOC110499879 snd1 coding downstream 575523 17344431 ~ 17655507 (+)
G1711808 LOC106576486 non-coding upstream 3121 16761434 ~ 16763632 (+)
G1711804 NA non-coding upstream 7180 16758819 ~ 16759573 (+)
G1711194 NA non-coding upstream 140702 16625845 ~ 16626051 (+)
G1711193 NA non-coding upstream 142260 16624175 ~ 16624493 (+)
G1711836 NA non-coding downstream 72364 16841272 ~ 16841488 (+)
G1711837 NA non-coding downstream 73331 16842239 ~ 16842448 (+)
G1711839 NA non-coding downstream 75310 16844218 ~ 16849468 (+)
G1711851 NA non-coding downstream 97333 16866241 ~ 16866522 (+)
G1711858 NA non-coding downstream 107286 16876194 ~ 16876704 (+)
G1711795 NA other upstream 46201 16719920 ~ 16720552 (+)
G1710901 mest other upstream 830332 15931098 ~ 15936421 (+)
LOC110500994 LOC106609603 other upstream 1029276 15700619 ~ 15737550 (+)
G1712658 NA other downstream 897372 17666280 ~ 17668586 (+)
si:dkey-159a18.1 LOC106609576 other downstream 1496787 18247128 ~ 18268691 (+)
G1713262 NA other downstream 1728239 18497147 ~ 18500874 (+)
G1713384 NA other downstream 1965883 18734791 ~ 18737436 (+)

Expression


Co-expression Network