G1711841


Basic Information

Item Value
gene id G1711841
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 17063519 ~ 17065866 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1961235
GTGGATGCGGCATGCTTTGGACGGTTTCTGTTGGTGTGTCTATCTCCATCACATGTCTAGGTACAAACTATCCTATTGGGCTCTCTGTTTTTCTATGGGGAGAGGTTGGTAGCTGGGGCTATTGTTTGAACATGAGTTCAATCAAAGTTGCTTTGATTAAGAAATGCTACAAtgctcctgggtggcgcagtggtctaaggcactgcatcgcagtgctagctgtgccaccagagactgggttcgagcccaggctctgtcgcagccggccgcgaccgggaggcccatggggcggcgcacaattggcctagcatcgtgagggtttggccggcagggataTCTCTCCAGCTGATTCTATGCAACATAGACTTCGTGTTGTGACTGTGTCTGAATTATCAATCTAGATTCTACAGTCTGAATTAGCGATGCATTTTAGTGGACAATGGGTTATTCTGTTTGTGTATTGTTCACATGTATAGTTTTTTTACTGCCTTCAAGTTTGGGAATGAATAAGAACATATAGCTCTTTGATTTTTATAAGTATGCTTTCACATACCGTTAAATGCAACTTTATTTATTGCACATAAGCTGTTGTTTTCATATGTTTTTTACATCATCAAATGTTAGATGTAAGGTACATAGCTAATTGGAAAGGTATTTTGTTTTCAGAAAATTATCCAATGCTTGTATTTCAACCCAGAAACTCAGTCTTCAGCCCAATGTCCcagcagactcacacacacacacagtagtgacTCTTCACATAGACTAGAATCTAAGGAGACACTTTCTTAACACCAGAGCCACGTTCCCAACAGATTCTAGCTTTTCAGTTTTTATGCACCCCCACTTTTGAATAGTTTTATTTTTCCAGTATATATGTCATTTGAAAAATGACCAAAAAAAGTTTAACAATGTAACGACTTGATGTTCTATCTAAAATGGTTCCCCACCTGAAATTGATATTTTTTGATACCAGCGTGCGTGAGTAGTTTCTTCATGCCACACCCATGCATGGCCAAGTCCTCCTGAAAGTGACCTCCCTTTCCTATGTGTGTTATCTAGCTaagatctacacacacacacacacacacacacacacagaaatgccaTCTCTTTATATCCTACCTTGTAAATACATCTATTTTTTTTCTACAAGAGGAAACCGAAAGATTTCCTTGATATCTGACATTAACGCATATGAGCAGGGGATGAGAACACAAGCAGTATGTTACTCTCTTGACATGGCAGAATACCTACAGGAGTTAGATGGAGTAAAGACCTTATAAACCTTGCCCTGACACCGGACACAACAGAGTTTTACCAGAGTATACAAACACAGACAAACCTTATTTTATCAACTCAAGTAGTTGCAGGAGAATTTAAATGTGCTCACAACAATGGATGTTGCATGTTTAGTTGGTGGTTCGTTCATACTATTTTTGTGTCCGGAAATTCTATTTAAAAAAGaaaagatagatagagagatcaAACGTTACGAGGGGAACGAAATTCTGAAGAGTAATTCTCAGATTATTTAAAGATGTAGGCTGACTGTACAAAGATTATGCTTGTAAAATCCGTCTGGTTTTCCACTTCTATGTAAACAGAAAAATCTAATGTCATGGTTTTGTGATTGTACACAGGAGGTATTGATAAATTATGCAAATTGTGCTGTAAAAACAACGGCTGTTGCCCCAAGTCTAAATATTAAATATCTGTACAAAGAAAACAA
>TU1961234
AGAGATTTGAAGGTGTGTAACGTGGCTTTCAGTTGAAAGGGCACACTCAGAGTGATGTCCTGCCTAGGGTCAAGGTGTGTGAGGGCTGGTTGGTTTAATGGTGACCTTTTGACCTTTGATCTTTGCCAAACATTGACCAAACACCACAGGTTCTCTCCAGCTGATTCTATGCAACATAGACTTCGTGTTGTGACTGTGTCTGAATTATCAATCTAGATTCTACAGTCTGAATTAGCGATGCATTTTAGTGGACAATGGGTTATTCTGTTTGTGTATTGTTCACATGTATAGTTTTTTTACTGCCTTCAAGTTTGGGAATGAATAAGAACATATAGCTCTTTGATTTTTATAAGTATGCTTTCACATACCGTTAAATGCAACTTTATTTATTGCACATAAGCTGTTGTTTTCATATGTTTTTTACATCATCAAATGTTAGATGTAAGGTACATAGCTAATTGGAAAGGTATTTTGTTTTCAGAAAATTATCCAATGCTTGTATTTCAACCCAGAAACTCAGTCTTCAGCCCAATGTCCcagcagactcacacacacacacagtagtgacTCTTCACATAGACTAGAATCTAAGGAGACACTTTCTTAACACCAGAGCCACGTTCCCAACAGATTCTAGCTTTTCAGTTTTTATGCACCCCCACTTTTGAATAGTTTTATTTTTCCAGTATATATGTCATTTGAAAAATGACCAAAAAAAGTTTAACAATGTAACGACTTGATGTTCTATCTAAAATGGTTCCCCACCTGAAATTGATATTTTTTGATACCAGCGTGCGTGAGTAGTTTCTTCATGCCACACCCATGCATGGCCAAGTCCTCCTGAAAGTGACCTCCCTTTCCTATGTGTGTTATCTAGCTaagatctacacacacacacacacacacacacacacagaaatgccaTCTCTTTATATCCTACCTTGTAAATACATCTATTTTTTTTCTACAAGAGGAAACCGAAAGATTTCCTTGATATCTGACATTAACGCATATGAGCAGGGGATGAGAACACAAGCAGTATGTTACTCTCTTGACATGGCAGAATACCTACAGGAGTTAGATGGAGTAAAGACCTTATAAACCTTGCCCTGACACCGGACACAACAGAGTTTTACCAGAGTATACAAACACAGACAAACCTTATTTTATCAACTCAAGTAGTTGCAGGAGAATTTAAATGTGCTCACAACAATGGATGTTGCATGTTTAGTTGGTGGTTCGTTCATACTATTTTTGTGTCCGGAAATTCTATTTAAAAAAGaaaagatagatagagagatcaAACGTTACGAGGGGAACGAAATTCTGAAGAGTAATTCTCAGATTATTTAAAGATGTAGGCTGACTGTACAAAGATTATGCTTGTAAAATCCGTCTGGTTTTCCACTTCTATGTAAACAGAAAAATCTAATGTCATGGTTTTGTGATTGTACACAGGAGGTATTGATAAATTATGCAAATTGTGCTGTAAAAACAACGGCTGTTGCCCCAAGTCTAAATATTAAATATCTGTACAAAGAAAACAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1961235 False 1732 lncRNA 0.40 3 17063519 17065866
TU1961234 True 1547 lncRNA 0.37 2 17064250 17065866

Neighbor

gene id symbol gene type direction distance location
LOC110516649 LOC106609628 coding upstream 139 17002417 ~ 17063380 (+)
LOC110501009 LOC105020375 coding upstream 89741 16914013 ~ 16973778 (+)
LOC110501007 LOC106576552 coding upstream 237590 16762397 ~ 16825929 (+)
LOC110499861 LOC106609625 coding upstream 304742 16742795 ~ 16758777 (+)
LOC110499863 tap26 coding upstream 321120 16740369 ~ 16742407 (+)
LOC110499865 LOC106576572 coding downstream 23103 17088969 ~ 17247292 (+)
LOC110501011 LOC105020379 coding downstream 206139 17272005 ~ 17319991 (+)
LOC110499879 snd1 coding downstream 278565 17344431 ~ 17655507 (+)
LOC110499878 LOC106576496 coding downstream 1078667 18144533 ~ 18203141 (+)
LOC118942894 NA coding downstream 1119480 18185346 ~ 18186325 (+)
G1711934 NA non-coding upstream 2545 17060707 ~ 17060974 (+)
G1711933 NA non-coding upstream 3210 17060091 ~ 17060309 (+)
G1711931 NA non-coding upstream 5220 17057953 ~ 17058299 (+)
G1711930 NA non-coding upstream 5648 17057537 ~ 17057871 (+)
G1711929 NA non-coding upstream 15384 17047871 ~ 17048135 (+)
G1712107 NA non-coding downstream 84942 17150808 ~ 17151285 (+)
G1712116 NA non-coding downstream 108504 17174370 ~ 17174808 (+)
G1712121 NA non-coding downstream 114884 17180750 ~ 17183952 (+)
G1712154 NA non-coding downstream 213040 17278906 ~ 17279147 (+)
G1712159 NA non-coding downstream 225160 17291026 ~ 17291239 (+)
G1711795 NA other upstream 342967 16719920 ~ 16720552 (+)
LOC110499847 LOC106609634 other upstream 534703 16318043 ~ 16528816 (+)
G1710901 mest other upstream 1127098 15931098 ~ 15936421 (+)
G1712658 NA other downstream 600414 17666280 ~ 17668586 (+)
si:dkey-159a18.1 LOC106609576 other downstream 1199829 18247128 ~ 18268691 (+)
G1713262 NA other downstream 1431281 18497147 ~ 18500874 (+)
G1713384 NA other downstream 1668925 18734791 ~ 18737436 (+)
G1714090 NA other downstream 2319106 19384972 ~ 19754609 (+)

Expression


Co-expression Network