G1712852


Basic Information

Item Value
gene id G1712852
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 17903394 ~ 17907873 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1962388
AGGAGGAGTGGGATGCTGGGGTTCAAGGACTTCCTCTTGTTCCTGCAACATTTTAATTACGTTTGGGTGTTTAGTGAGATGCATCCTGGAGCCTCATCAAGCCATATAAACACACCCAACAACACACAAAGGCTGCAAAGGACCCCCAGAGACCAGAGGCATCAGTTTTTGTGACTGAGTCAACCAACCGGAAAGACATACGGattacacctggcgAGTCCTGTGCTTGGTCCACGGACCAGGtctccagtatgtctccccagcctggtgagtccggagcctccagcgacggtccccagtccggagccttcagcgacggtccccagtccggagcctccagcgacggtccgcaGTCCGGAGTCTCCAAACCGGAGACGCCACCGAtgtagatgcccacccagaccctcccctataatgtcaggtttgcggcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1962388 True 431 lncRNA 0.57 2 17903394 17907873

Neighbor

gene id symbol gene type direction distance location
LOC110499879 snd1 coding upstream 247887 17344431 ~ 17655507 (+)
LOC110501011 LOC105020379 coding upstream 583403 17272005 ~ 17319991 (+)
LOC110499865 LOC106576572 coding upstream 656102 17088969 ~ 17247292 (+)
LOC110516649 LOC106609628 coding upstream 840014 17002417 ~ 17063380 (+)
LOC110501009 LOC105020375 coding upstream 929616 16914013 ~ 16973778 (+)
LOC110499878 LOC106576496 coding downstream 236660 18144533 ~ 18203141 (+)
LOC118942894 NA coding downstream 277473 18185346 ~ 18186325 (+)
LOC110499885 NA coding downstream 335221 18243094 ~ 18244775 (+)
si:dkey-159a18.1 LOC106609576 coding downstream 339255 18247128 ~ 18268691 (+)
LOC110499882 LOC106576502 coding downstream 362914 18270787 ~ 18290199 (+)
G1712729 NA non-coding upstream 150038 17753086 ~ 17753356 (+)
G1712708 NA non-coding upstream 164127 17739024 ~ 17739267 (+)
G1712704 NA non-coding upstream 171603 17709190 ~ 17731791 (+)
G1712703 NA non-coding upstream 200065 17703099 ~ 17703329 (+)
G1712677 NA non-coding upstream 223322 17679849 ~ 17680072 (+)
G1712872 NA non-coding downstream 48111 17955984 ~ 17958013 (+)
G1712885 NA non-coding downstream 82384 17990257 ~ 17993841 (+)
G1712947 NA non-coding downstream 95009 18002882 ~ 18003279 (+)
G1712956 NA non-coding downstream 100860 18008733 ~ 18009131 (+)
G1712961 NA non-coding downstream 105768 18013641 ~ 18013847 (+)
G1712658 NA other upstream 234808 17666280 ~ 17668586 (+)
LOC110499863 tap26 other upstream 1162176 16740369 ~ 16742407 (+)
G1711795 NA other upstream 1182842 16719920 ~ 16720552 (+)
LOC110499847 LOC106609634 other upstream 1374578 16318043 ~ 16528816 (+)
G1713262 NA other downstream 589274 18497147 ~ 18500874 (+)
G1713384 NA other downstream 826918 18734791 ~ 18737436 (+)
G1714090 NA other downstream 1477099 19384972 ~ 19754609 (+)
nmes1 nmes1 other downstream 2201325 20109125 ~ 20113891 (+)

Expression


Co-expression Network