G1712885


Basic Information

Item Value
gene id G1712885
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 17990257 ~ 17993841 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1962428
ctattacatacttcagagctggcccaaaattcacaacgccttcggtacaaaccataaaaaaaccataaaacacgtagttacgttctagctgcgggtccatttcttatgttatgtgttggcctagctgaggcgaccccgaatcccaagtttcggctcgataggtcatttggtgtccgagaaaaaccctaattggtgctgaaaatccactattttccatgacttgctacggggtccttgaatgagctatcagacagaaacgttggggtctgtctatatgggccgagacgttcgcaatgcacctagtcttgcgactctgggacatttctaaatgtcgtcattttcgtgatgcaaaaatgaattgaagttatttcaaatgtacgaggctgtttctcggtccgagaaccgtctagagccacgtaactcgccacgcaccatggcccggaggtctagaacaggtttctaaagtttcggaactctaggtccgaccgttcttttttagctcgaacaaagctaactattgcggccactgtctgtctctacgcaccccaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1962428 True 550 lncRNA 0.47 3 17990257 17993841

Neighbor

gene id symbol gene type direction distance location
LOC110499879 snd1 coding upstream 334750 17344431 ~ 17655507 (+)
LOC110501011 LOC105020379 coding upstream 670266 17272005 ~ 17319991 (+)
LOC110499865 LOC106576572 coding upstream 742965 17088969 ~ 17247292 (+)
LOC110516649 LOC106609628 coding upstream 926877 17002417 ~ 17063380 (+)
LOC110501009 LOC105020375 coding upstream 1016479 16914013 ~ 16973778 (+)
LOC110499878 LOC106576496 coding downstream 150692 18144533 ~ 18203141 (+)
LOC118942894 NA coding downstream 191505 18185346 ~ 18186325 (+)
LOC110499885 NA coding downstream 249253 18243094 ~ 18244775 (+)
si:dkey-159a18.1 LOC106609576 coding downstream 253287 18247128 ~ 18268691 (+)
LOC110499882 LOC106576502 coding downstream 276946 18270787 ~ 18290199 (+)
G1712872 NA non-coding upstream 32244 17955984 ~ 17958013 (+)
G1712852 NA non-coding upstream 82384 17903394 ~ 17907873 (+)
G1712729 NA non-coding upstream 236901 17753086 ~ 17753356 (+)
G1712708 NA non-coding upstream 250990 17739024 ~ 17739267 (+)
G1712704 NA non-coding upstream 258466 17709190 ~ 17731791 (+)
G1712947 NA non-coding downstream 9041 18002882 ~ 18003279 (+)
G1712956 NA non-coding downstream 14892 18008733 ~ 18009131 (+)
G1712961 NA non-coding downstream 19800 18013641 ~ 18013847 (+)
G1712962 NA non-coding downstream 20371 18014212 ~ 18014453 (+)
G1712963 NA non-coding downstream 20674 18014515 ~ 18015348 (+)
G1712658 NA other upstream 321671 17666280 ~ 17668586 (+)
LOC110499863 tap26 other upstream 1249039 16740369 ~ 16742407 (+)
G1711795 NA other upstream 1269705 16719920 ~ 16720552 (+)
LOC110499847 LOC106609634 other upstream 1461441 16318043 ~ 16528816 (+)
G1713262 NA other downstream 503306 18497147 ~ 18500874 (+)
G1713384 NA other downstream 740950 18734791 ~ 18737436 (+)
G1714090 NA other downstream 1391131 19384972 ~ 19754609 (+)
nmes1 nmes1 other downstream 2115357 20109125 ~ 20113891 (+)

Expression


Co-expression Network