G1713044


Basic Information

Item Value
gene id G1713044
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 18080075 ~ 18083417 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1962614
GCTGTAAGGGCTGTACGTTTTGTCCTTTACGGGTCTTTTTGCGGTCTGGGCTTGCTGTTCATAAGGCAGTAGCCAGGAAGCCCTTACCCCAAAAAGTATCTGCAGAGGACCCCCGCATCTCATCAGGATACGACTACCTGCCCCATCATTGGACAGTGAGTAACTTCCTCTTGCCCCCTCATTGGACAATGAGTCACTTCCTATTGTTCCCTGATTGGTCAGCAAAACATCTAGAAATCAGTCATCACTCATAGCACTTCAAAAAGTAATCTACTGTGGTTGAGGATAACGTTATGTCAACGTTTCATACTACATATCTAATGGACGGgtgtggtatcgtgttaatgtttaatactacatatctaatggacaggtgtggtattgtgttaatatttaatactacatatctaatggacaggtgtggtattgtgttaatgtttaatactacatatctaatggacaggtgtggtattgtgttaatgtttaatactacatatctaatggatgggtgtggtatcgtgttaatgtttaatactacatatctaatggatgggtgtggtattgtgttaatgtttaatactacatatctaatggacaggtgtggtattgtgttaatgtttaatactacatatctaatgg

Function

NR:

description
PREDICTED: small nuclear ribonucleoprotein-associated protein N-like isoform X1

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1962614 True 639 lncRNA 0.39 4 18080075 18083417

Neighbor

gene id symbol gene type direction distance location
LOC110499879 snd1 coding upstream 424568 17344431 ~ 17655507 (+)
LOC110501011 LOC105020379 coding upstream 760084 17272005 ~ 17319991 (+)
LOC110499865 LOC106576572 coding upstream 832783 17088969 ~ 17247292 (+)
LOC110516649 LOC106609628 coding upstream 1016695 17002417 ~ 17063380 (+)
LOC110501009 LOC105020375 coding upstream 1106297 16914013 ~ 16973778 (+)
LOC110499878 LOC106576496 coding downstream 61116 18144533 ~ 18203141 (+)
LOC118942894 NA coding downstream 101929 18185346 ~ 18186325 (+)
LOC110499885 NA coding downstream 159677 18243094 ~ 18244775 (+)
si:dkey-159a18.1 LOC106609576 coding downstream 163711 18247128 ~ 18268691 (+)
LOC110499882 LOC106576502 coding downstream 187370 18270787 ~ 18290199 (+)
G1713043 NA non-coding upstream 332 18079472 ~ 18079743 (+)
G1713011 NA non-coding upstream 21584 18058198 ~ 18058491 (+)
G1712984 NA non-coding upstream 43943 18035909 ~ 18036132 (+)
G1712963 NA non-coding upstream 64727 18014515 ~ 18015348 (+)
G1712962 NA non-coding upstream 65622 18014212 ~ 18014453 (+)
G1713050 NA non-coding downstream 3164 18086581 ~ 18086905 (+)
G1713051 NA non-coding downstream 3576 18086993 ~ 18088833 (+)
G1713058 NA non-coding downstream 11982 18095399 ~ 18095623 (+)
G1713066 NA non-coding downstream 16224 18099641 ~ 18099877 (+)
G1713068 NA non-coding downstream 17611 18101028 ~ 18101259 (+)
G1712658 NA other upstream 411489 17666280 ~ 17668586 (+)
LOC110499863 tap26 other upstream 1338857 16740369 ~ 16742407 (+)
G1711795 NA other upstream 1359523 16719920 ~ 16720552 (+)
LOC110499847 LOC106609634 other upstream 1551259 16318043 ~ 16528816 (+)
G1713262 NA other downstream 413730 18497147 ~ 18500874 (+)
G1713384 NA other downstream 651374 18734791 ~ 18737436 (+)
G1714090 NA other downstream 1301555 19384972 ~ 19754609 (+)
nmes1 nmes1 other downstream 2025781 20109125 ~ 20113891 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_028730 dre-mir-129-1 non-coding NC_007115.7 CM002888.2 19047466 ~ 19047555 (-)
grasscarp (Ctenopharyngodon idella) CI01000020_00466505_00489442 NA coding CI01000020 null 466276 ~ 489664 (+)
tiger barb (Puntius tetrazona) G27562 NA non-coding NC_056702.1 CM032071.1 9686499 ~ 9872003 (+)
mexican tetra (Astyanax mexicanus) G298890 NA non-coding NW_019172830.1 APWO02000048.1 210958 ~ 212769 (+)