G1713331



Basic Information


Item Value
gene id G1713331
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 18668971 ~ 18669328 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1962935
gtgagatcttgcgtggagccccagatcgagggagattatcagtggtcgtgtatgtcttccatttcctaataattgctcccacagttgatttcttcaaaccaagctgcttacctattgcagattcagtcttcccagcctggtgcaggtctacaattttgtttctggtgtcctttgacagctctttggtcttagccatagtggagtttggagtgtgactgtttgaggttgtggacaggtgtcttttatactgataacaagttcaaacaggtgccattaatacaggtaacgagtggaggacagaggagcctcttaaagaaggtctgtgagagccagaaatcttgcttgtttgtaggtgaca

Function


NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1962935 True 358 lncRNA 0.45 1 18668971 18669328

Neighbor


gene id symbol gene type direction distance location
LOC110499894 LOC106609040 coding upstream 14709 18630643 ~ 18654262 (+)
LOC110499893 LOC106576462 coding upstream 40560 18621177 ~ 18628411 (+)
LOC110499892 lum coding upstream 51167 18613683 ~ 18617804 (+)
LOC100301653 LOC100301653 coding upstream 72212 18567868 ~ 18596759 (+)
LOC110499888 LOC106609036 coding upstream 152938 18511675 ~ 18516033 (+)
si:ch211-244b2.3 LOC106609042 coding downstream 2585 18671875 ~ 18683306 (+)
fut9 fut9 coding downstream 49980 18719308 ~ 18720592 (+)
LOC110499900 LOC106596632 coding downstream 57369 18726697 ~ 18734052 (+)
LOC110499901 LOC106609586 coding downstream 71058 18740386 ~ 18754645 (+)
LOC110499903 LOC106609567 coding downstream 89131 18758459 ~ 18770532 (+)
G1713352 NA non-coding upstream 5464 18663172 ~ 18663507 (+)
G1713351 NA non-coding upstream 8287 18660355 ~ 18660684 (+)
G1713332 NA non-coding upstream 56342 18612387 ~ 18612629 (+)
G1713324 NA non-coding upstream 82304 18586072 ~ 18586667 (+)
G1713233 NA non-coding upstream 150603 18517739 ~ 18518368 (+)
G1713343 scyl2 non-coding downstream 14080 18683408 ~ 18686424 (+)
G1713359 NA non-coding downstream 17333 18686661 ~ 18687003 (+)
G1713360 NA non-coding downstream 18447 18687775 ~ 18687995 (+)
G1713362 NA non-coding downstream 22081 18691409 ~ 18691750 (+)
G1713262 NA other upstream 168097 18497147 ~ 18500874 (+)
si:dkey-159a18.1 LOC106609576 other upstream 401463 18247128 ~ 18268691 (+)
G1712658 NA other upstream 1000385 17666280 ~ 17668586 (+)
LOC110501009 LOC105020375 other upstream 1725182 16914013 ~ 16973778 (+)
LOC110499863 tap26 other upstream 1927753 16740369 ~ 16742407 (+)
G1713384 NA other downstream 65463 18734791 ~ 18737436 (+)
G1714090 NA other downstream 715644 19384972 ~ 19754609 (+)
nmes1 nmes1 other downstream 1439870 20109125 ~ 20113891 (+)
G1715392 NA other downstream 1889094 20558422 ~ 20558751 (+)
LOC110499980 LOC106576426 other downstream 2329270 20954576 ~ 21004439 (+)

Expression



Co-expression Network