G1713343 (scyl2)


Basic Information

Item Value
gene id G1713343
gene name scyl2
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 18683408 ~ 18686424 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1962952
TATTTTCATATATATGTACAGATTTTCATTGAACCACCTCAGACAACATCACACAATACATAGATCATAGAGGCCACACGACACATATGACAGCAGTAGGATACAAAGGATCAGAACTCTTGTAGAAGAATAGGCTTTCTTTTTTGTCCTCGCGTCCAAACGCACGAGTCACGATGACAGGAAATGCAATCCAGTTCTCGCCCTCAAACAGGCTTCCGTCGTCATAGTTACAATCACATGAACATTGCGGCTACCTTTCGTGAAAGATGgacatcagagaggtctttgccCAATCAGGACAGACCTCCATCACTTGTGTCCAATAGAAAGAGGTTTACAACCCAGAAGGACCACCTTTTTGTTATACATGAGCCCATGACATTATCATTGTGCCAGCTCAGTGCCAGCTCACCTAGTCACGGTTTACAGTaggcatacatttatttttttaaatccaacaAAGACCTGTGAATATAAGTTAGCATGTGTTCAGTTACCTAACAAAACCCACATCTTCCAGTCTGCAAACAGCATTCAGTGAGGATTCACACAAGGGGGTTGGTCTCAAAAGTTTACAATAGCGTCCTTTTCTCATCTCCTTCCTTCACCTGCACTAGTCTGCAACAGGTGGATAGGTGAGATGACACTCCTGTCCCATTTTGCCCATTGGGCTTTCACCTATCCTGGGatttcagatcagtgcagatgaaggagaaACGCAAAGGGGACGAGGAAAGGAGACTACTTTTGACTATTAAAATGCAGCCACCGACTTAGTTCCACCACCAAGGATTATTACTGCAAACAGCGCTCCTCTAAGGCCTCTCAATCATCATCACAACAACCCAGGGGCCCCTTTAAGAGCTCTCCCATTTTAAATAGATTTATTTATCTACAATTTAGGACAGGTCCCCTTCAACGAAAAAGTGCTCAACTCAtaatatacgtatatatatatatataaaaactgcATTTGATATATGTCCAACGATTAACTTAAAATGCACAGATTGCTTGCTTTGTTGAAAGCAGCCTGGTTTGATGCATGGAATAAAATAATTCATTACTAAATTCACCACATTTCAACAGGATCACAATCGTTGGTGGTGTCCCAGCTTGGTCAGGTCAGTAACATGATGGAAGGGAACCCATTGATGAAGTCAGAGGGGGTATTACAAAACAGGAACACACAGGGCTAAAGTCACCAGACACCGGGCAAACTAACTCAATGAATTAGGATTGTGCTGACATTTCAATATGCACACGTGTATACTACTTCACATTCATTCACAATTCCCAGTATATATCGACCAATCACTCCCTTACAGCAAACCATTCAGTACATATGCAGGTGAGTTACTTCAATGAGGAAGGTAGCCTCAGTGTGTAACGGTCACCCTCACAGCACGCACAGGATTCTGTGTGGATAACAATCCCTAACCAGACTAATTGCCTAAACACAATCAACCCCTCCCTTTTCAAACTGGTCGTTGAACTGGATTTCGTCTCAGAAAATACCTTCTTTTTTTTTAGGTCAGATGTAGAAACTGCAGAATTGCCAGTAACATTTCACCGCACccactataacatctgctaagctgtgtacgcaaccaataagCTTCCATTAGATTTTCACTTCCATCCAGTTTCATTTGGATTCATCTATACTGTAAGAATCTTGACATCACTGTTGAATCCTTATCCATCATCTCATTCTAGGCAGAGAACAGAAAGCATGGGTACTAAAAATCCCAAAATAGAGTGGGGTGTTACTGCGGAGACCGTTTCCATGGAGACTTGGCCTTTCCGCCTGTGCGGTTTAGCCGGCGATTCTACAGCTCTTCTGGATTGTCGTCCTCAAAGCAACAGGACCCCACTAAAAAGAACCACGTTGATATGATATAGCAGGCTGCTGAGGTGGCAGCATGAATAACATGTGTTGGCGCTGGGCTAAAAAGGAATGGGCTGAGAAAGACTGGTCTCCATGCCACTGCTCATCTTAGCACATAGAACAGGGATTATGGAGAAGAGATGCATTCTAGAATAAACCTTTCACCCCAAAGTGTCTCAGGTAAGAAACGATATGAAACCCCCACAAACATTACTGAGAGCAGAACACAACGTAAGTGTCttttcccctcactctctctctctctagtcaagACGGTTTGGAATCCGCGTGCAGATTGAAAAGCTGAGTCTTCAGTCCGATGGGAGCTTAGAAGAACCACACTGCAACCCAAACCACAGAAGATTAAAATACAAATAGCAACAAATATCAAGTGAATTTCATCATCATTTTCACAGTCGGTCCAAAAAGTGGATTTGTCTTTCTTCTTGTTTGCAGTTCAAAAGTCCACCTCCCTTTTTCATCAGTCTGTCGTCATTAAAAGAGGGGAAAGTTGTTTTCAGCCAAATAGGTCTTTCAGGTCGTTGTTGACGGACAAACTGTGTCTGAGCCCACCACCTGCGTTCATTACGGGAGCGGCCGTGGGCTGAGAGAAGTTCTGCGGGCTGAAGAAAGGGTTGGCCTGCATCCCGAACCCGCTGGTCACCCCTCCCATGACTAATGGCGCGCCCTGCATCGGGGCAGTCTGACTGGGCTGGGCTGAACCAAACTGATTAAGCCAGGGGGTGGCGGTGGTCCCAGGGGTGAGCTTGGGAGGAGCCATTTGGTTGAGGCTGACTTTGGGCTTGTTGGAAGTGAATAAGGAGTCCAGGGCAGACATGTCAGGGGTGTTGGTACTCCCTTGGTTGTGGGTCAGGGCGCCAAAGTTAggggtgctggtggtggtggcCATCCCTCCGTAGAGGCCGGGGCCGGGGGGCCGCATGCCCTGCCCCCCTGTCTGGAAGCCCATGGTTGGGTTGTAGCCGTTGCTGGCCATAGAGCCCATGGGTGTGGTGGAGGGGTAGGCTGAGATGGTGCTGCCCTGGATGAGGCCTGGTCTGGGGGGAGAGGTGAGGGACAGGCTGCCCAGGGATGTCATATTGTTCAGCAGGCAGCTGGTCAGGTC

Function

symbol description
scyl2 Predicted to enable ATP binding activity and protein kinase activity. Predicted to act upstream of or within protein phosphorylation. Human ortholog(s) of this gene implicated in arthrogryposis multiplex congenita-4. Orthologous to human SCYL2 (SCY1 like pseudokinase 2).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1962952 True 3017 lncRNA 0.46 1 18683408 18686424

Neighbor

gene id symbol gene type direction distance location
si:ch211-244b2.3 LOC106609042 coding upstream 102 18671875 ~ 18683306 (+)
LOC110499894 LOC106609040 coding upstream 29146 18630643 ~ 18654262 (+)
LOC110499893 LOC106576462 coding upstream 54997 18621177 ~ 18628411 (+)
LOC110499892 lum coding upstream 65604 18613683 ~ 18617804 (+)
LOC100301653 LOC100301653 coding upstream 86649 18567868 ~ 18596759 (+)
fut9 fut9 coding downstream 32884 18719308 ~ 18720592 (+)
LOC110499900 LOC106596632 coding downstream 40273 18726697 ~ 18734052 (+)
LOC110499901 LOC106609586 coding downstream 53962 18740386 ~ 18754645 (+)
LOC110499903 LOC106609567 coding downstream 72035 18758459 ~ 18770532 (+)
LOC110499902 LOC106609566 coding downstream 83824 18770248 ~ 18840460 (+)
G1713331 NA non-coding upstream 14080 18668971 ~ 18669328 (+)
G1713352 NA non-coding upstream 19901 18663172 ~ 18663507 (+)
G1713351 NA non-coding upstream 22724 18660355 ~ 18660684 (+)
G1713332 NA non-coding upstream 70779 18612387 ~ 18612629 (+)
G1713359 NA non-coding downstream 237 18686661 ~ 18687003 (+)
G1713360 NA non-coding downstream 1351 18687775 ~ 18687995 (+)
G1713362 NA non-coding downstream 4985 18691409 ~ 18691750 (+)
G1713363 NA non-coding downstream 5701 18692125 ~ 18692427 (+)
G1713365 scyl2 non-coding downstream 9480 18695904 ~ 18696123 (+)
G1713262 NA other upstream 182534 18497147 ~ 18500874 (+)
si:dkey-159a18.1 LOC106609576 other upstream 415900 18247128 ~ 18268691 (+)
G1712658 NA other upstream 1014822 17666280 ~ 17668586 (+)
LOC110501009 LOC105020375 other upstream 1739619 16914013 ~ 16973778 (+)
LOC110499863 tap26 other upstream 1942190 16740369 ~ 16742407 (+)
G1713384 NA other downstream 48367 18734791 ~ 18737436 (+)
G1714090 NA other downstream 698548 19384972 ~ 19754609 (+)
nmes1 nmes1 other downstream 1422774 20109125 ~ 20113891 (+)
G1715392 NA other downstream 1871998 20558422 ~ 20558751 (+)
LOC110499980 LOC106576426 other downstream 2312174 20954576 ~ 21004439 (+)

Expression


Co-expression Network