G1713366


Basic Information

Item Value
gene id G1713366
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 18697279 ~ 18699137 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1962976
CAACAGGCCATACTTGGTCTCCACGTCGTACAGCTTGTAGTCCTTGATGTCTGTGGGCACGGGGCTGGGCAGGTTGTCCCACTGACCCAGCACATTGGACAGACTGGCAAACACTGGCTCTGTACAGAACGCCAGGCAGtccCTCGACTCCTCCAGTGGGTGCTGGACAGTGAGCAGACGAGGATGACGCAGTCTGGTGAGCTGCTGCACACCTCTCTTCAGAGACTCAATGATCTGGTCCTTGTCAAACTTCTGATACTTCTCCACCATCTTTttatcaaacacaaacacagccac
>TU1962975
CTGTAATTATAATTTTGACATTTTTCCAGAGGAGGTCTTAGTCtcacaattttacatctaaccaAGATGTTTGGAGGAGTATTTCTCAAGTGGATAGAATTTGCATGAAAACGATTAGTCTGTCGTTGAATGACTAcaaacacttcattgaagaatccctactgttgaccaatcacagacgaagGGGCGTAAACTTCCGCTACCAAACTTGGAGAAGCCTCAAGAAAGAAATGGTGTGCTCGTACAGCCACAAAAAAAACCTCGACTCCTCCAGTGGGTGCTGGACAGTGAGCAGACGAGGATGACGCAGTCTGGTGAGCTGCTGCACACCTCTCTTCAGAGACTCAATGATCTGGTCCTTGTCAAACTTCTGATACTTCTCCACCATCTTTttatcaaacacaaacacagccac

Function

NR:

description
SCY1-like protein 2, partial

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1962976 False 297 lncRNA 0.54 2 18697279 18699137
TU1962975 True 415 lncRNA 0.43 2 18698625 18699137

Neighbor

gene id symbol gene type direction distance location
si:ch211-244b2.3 LOC106609042 coding upstream 13973 18671875 ~ 18683306 (+)
LOC110499894 LOC106609040 coding upstream 43017 18630643 ~ 18654262 (+)
LOC110499893 LOC106576462 coding upstream 68868 18621177 ~ 18628411 (+)
LOC110499892 lum coding upstream 79475 18613683 ~ 18617804 (+)
LOC100301653 LOC100301653 coding upstream 100520 18567868 ~ 18596759 (+)
fut9 fut9 coding downstream 20171 18719308 ~ 18720592 (+)
LOC110499900 LOC106596632 coding downstream 27560 18726697 ~ 18734052 (+)
LOC110499901 LOC106609586 coding downstream 41249 18740386 ~ 18754645 (+)
LOC110499903 LOC106609567 coding downstream 59322 18758459 ~ 18770532 (+)
LOC110499902 LOC106609566 coding downstream 71111 18770248 ~ 18840460 (+)
G1713365 scyl2 non-coding upstream 1156 18695904 ~ 18696123 (+)
G1713363 NA non-coding upstream 4852 18692125 ~ 18692427 (+)
G1713362 NA non-coding upstream 5529 18691409 ~ 18691750 (+)
G1713360 NA non-coding upstream 9284 18687775 ~ 18687995 (+)
G1713359 NA non-coding upstream 10276 18686661 ~ 18687003 (+)
G1713368 NA non-coding downstream 4507 18703644 ~ 18704448 (+)
G1713369 NA non-coding downstream 6018 18705155 ~ 18705421 (+)
G1713372 NA non-coding downstream 9635 18708772 ~ 18709101 (+)
G1713379 NA non-coding downstream 24916 18724053 ~ 18724458 (+)
G1713384 NA non-coding downstream 35654 18734791 ~ 18737436 (+)
G1713262 NA other upstream 196405 18497147 ~ 18500874 (+)
si:dkey-159a18.1 LOC106609576 other upstream 429771 18247128 ~ 18268691 (+)
G1712658 NA other upstream 1028693 17666280 ~ 17668586 (+)
LOC110501009 LOC105020375 other upstream 1753490 16914013 ~ 16973778 (+)
LOC110499863 tap26 other upstream 1956061 16740369 ~ 16742407 (+)
G1714090 NA other downstream 685835 19384972 ~ 19754609 (+)
nmes1 nmes1 other downstream 1410061 20109125 ~ 20113891 (+)
G1715392 NA other downstream 1859285 20558422 ~ 20558751 (+)
LOC110499980 LOC106576426 other downstream 2299461 20954576 ~ 21004439 (+)

Expression


Co-expression Network