G1713384


Basic Information

Item Value
gene id G1713384
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 18734791 ~ 18737436 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1962996
ctttccgaagacactgGGCCCTTTCCAAAGTTACCCCTGGACAGGGCAAACCAcacccacttttccaaaacaCAACCCCCACACCAACATAGGGATAACAACAAACcactaacttactaccctgagacaaggccaagtatagcccacaaagagtacaggaaggatgggagagctcaagcaagccagtgactcagtcccCGCAATAGGGTCAGAGGAAGAGAAtcccagtagagagaggggagccggccaggcagagacagcaagggtggttaaTCACTCCAGTGCCTTGATGTTCAACCTTCGCACCTCCAAACTTGACTGTTGAATGTTCTTTTTTTGCACACTGTTTGCATAGTTATTTCATTGTTTGGACAGAATATACTGTGATTACAAATGTGAAATATCATGTAAATGTCTATCACACTAATGTCTTGTCATGACAGAAAAGGTAACAAGTTATAGTTACTCACATTTAAATCATTATTTGCCCAGATATCTGCTGATTCCAGTAATTCTGTTATTGTTTCAGGGTAATAAACTGACAATACAAGAGCAATGGTTTATTGCACTGAACAGGGTTTGAGAATGATGGATGGAAAAGAGGAACTCTGTTACCATAGTGTTCTTGTATTGTTAACCCTCTTGCACAAAGAATGTGGTATTACCATGAAACAATGCTGAAGGTGTTTCTGAGCAAATAGTGTTTGGAAAAATATAACTAGcaaataatgtaatgtaatgtcaaatcaaattgtatttgtcacatgtgccaaatacaacaggtgtagtagaccttacagtgaaatgcttaattacaagcccttaaccaacaatgcagttaagaaaaataagtgttaagaaagtatttaataacataaactgaagtaaaaaatgtaaacattaaaACATTCTTATAAAAAgataagaaaatagaaaaataacaaataattaaagagcaacaataaaataacagaaaaGAGCCTATGTACACGGGgtcccggtacagagtcaaagtgcgggagcacaggttagttgaggtaattgaggtaatatgtacatgtaggtagaggtagtgactatacatagataataaacagagagtagcagcagcagcgtaaaaatggggtggggggtggggtcaAATAGTACAggtagccatttaattagctgttcaggagtcttatggcttgggggtagaagctcttaagaagcattttggacctagacttacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcatgcttcaaacataaagatataaagatataaagatatgaagaatcaa
>TU1962997
ctttccgaagacactgGGCCCTTTCCAAAGTTACCCCTGGACAGGGCAAACCAcacccacttttccaaaacaCAACCCCCACACCAACATAGGGATAACAACAAACcactaacttactaccctgagacaaggccaagtatagcccacaaagagtacaggaaggatgggagagctcaagcaagccagtgactcagtcccCGCAATAGGGTCAGAGGAAGAGAAtcccagtagagagaggggagccggccaggcagagacagcaagggtggttaaTCACTCCAGTGCCTTGATGTTCAACCTTCGCACCTCCAAACTTGACTGTTGAATGTTCTTTTTTTGCACACTGTTTGCATAGTTATTTCATTGTTTGGACAGAATATACTGTGATTACAAATGTGAAATATCATGTAAATGTCTATCACACTAATGTCTTGTCATGACAGAAAAGGTAACAAGTTATAGTTACTCACATTTAAATCATTATTTGCCCAGATATCTGCTGATTCCAGTAATTCTGTTATTGTTTCAGGGTAATAAACTGACAATACAAGAGCAATGGTTTATTGCACTGAACAGGGTTTGAGAATGATGGATGGAAAAGAGGAACTCTGTTACCATAGTGTTCTTGTATTGTTAACCCTCTTGCACAAAGAATGTGGTATTACCATGAAACAATGCTGAAGGTGTTTCTGAGCAAATAGTGTTTGGAAAAATATAACTAGcaaataatgtaatgtaatgtcaaatcaaattgtatttgtcacatgtgccaaatacaacaggtgtagtagaccttacagtgaaatgcttaattacaagcccttaaccaacaatgcagttaagaaaaataagtgttaagaaagtatttaataacataaactgaagtaaaaaatgtaaacattaaaACATTCTTATAAAAAgataagaaaatagaaaaataacaaataattaaagagcaacaataaaataacagaaaaGAGCCTATGTACACGGGgtcccggtacagagtcaaagtgcgggagcacaggttagttgaggtaattgaggtaatatgtacatgtaggtagaggtagtgactatacatagataataaacagagagtagcagcagcagcgtaaaaatggggtggggggtggggtcaAATAGTACAggtagccatttaattagctgttcaggagtcttatggcttgggggtagaagctcttaagaagcattttggacctagacttacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcatgcttcaaacataaagatataaagatataaagatatgaagaatcaacaacaagtgggacacaatcaagaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaacagaaaaattgggcgtgcaaaattattcagcccctttactttcagtgcagcaaactctctccagaagttcagtgaggatctctgaatgatccaatgttgacctaaatgactaatgatgataaatacaatccacctgtgtgtaatcaagtctccgtataaatgcacctgcactgtgatagtctcagaggtccgttaaaagcgcagagagcatcatgaagaacaaggaacacaccaggcaggtccgagatactgttgtgaagaagtttaaagccggatttggatacaaaaagatttcccaagctttaaacattccaaggagcactgtgcaagcgataatattgaaatggaaggagtatcagacaacggcaaatctaccaagacctggccgtccatctaaactttcagctcatacaaggagaagactgatcagagatgcagccaagaggcccatgatcactctggatgaactgcagagatctacagctgaggtgggagactctgtccataggacaacaatcagttgtatattgcacaaatctggcctttatggaagagtggcaagaagaaagcaatttcttaaagatatccataaaaagtgtcgtttaaagtttgccacaagccacctgggagacacaccaaacatgtggaagaaggtgctctggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaacgttatgtttggcgtaaaagcaacacagctcatcaccctgaacacaccatccccactgtcaaacatggtggtggcagcatcatggtttgggcctgcttttcttcagcagggacagggaagatggttaaaattgatgggaagatggatgtagccaaatacaggaccattctggaagaaaacctgatggagtctgtaaaagacctgatggagtctgcaaaagacctgagactgggacagagatttgtcttccaacaagacaatgatccaaaacataaagcaaaatctacaatggaatggttcaaaaataaacatatccaggtgttagaatggccaagtcaaagtccagacctgaatccaatcgagaatatgtggaaagaactgaaaactgctgttcacaaatgctctccatccaacctcactgagctcgagctgttttgcaaggaggaatgggaaaacatttcggtctctcgatgtgcaaaactgatagagacataccccaagcgacttacagctgtaatcgcagcaaaaggtggcg

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1962996 False 1334 lncRNA 0.39 1 18734791 18736124
TU1962997 True 2646 TUCP 0.41 1 18734791 18737436

Neighbor

gene id symbol gene type direction distance location
LOC110499900 LOC106596632 coding upstream 739 18726697 ~ 18734052 (+)
fut9 fut9 coding upstream 14199 18719308 ~ 18720592 (+)
si:ch211-244b2.3 LOC106609042 coding upstream 51485 18671875 ~ 18683306 (+)
LOC110499894 LOC106609040 coding upstream 80529 18630643 ~ 18654262 (+)
LOC110499893 LOC106576462 coding upstream 106380 18621177 ~ 18628411 (+)
LOC110499901 LOC106609586 coding downstream 4262 18740386 ~ 18754645 (+)
LOC110499903 LOC106609567 coding downstream 22335 18758459 ~ 18770532 (+)
LOC110499902 LOC106609566 coding downstream 34124 18770248 ~ 18840460 (+)
LOC110501017 LOC106609562 coding downstream 487313 19223437 ~ 19226634 (+)
LOC118942896 NA coding downstream 524621 19260745 ~ 19279035 (+)
G1713379 NA non-coding upstream 10333 18724053 ~ 18724458 (+)
G1713372 NA non-coding upstream 25690 18708772 ~ 18709101 (+)
G1713369 NA non-coding upstream 29370 18705155 ~ 18705421 (+)
G1713368 NA non-coding upstream 30343 18703644 ~ 18704448 (+)
G1713366 NA non-coding upstream 35654 18697279 ~ 18699137 (+)
G1713385 NA non-coding downstream 1506 18737630 ~ 18738946 (+)
G1713386 NA non-coding downstream 3382 18739506 ~ 18740125 (+)
G1713421 NA non-coding downstream 88340 18824464 ~ 18825189 (+)
G1713808 NA non-coding downstream 119797 18855921 ~ 18856161 (+)
G1713814 NA non-coding downstream 123526 18859650 ~ 18859869 (+)
G1713262 NA other upstream 233917 18497147 ~ 18500874 (+)
si:dkey-159a18.1 LOC106609576 other upstream 467283 18247128 ~ 18268691 (+)
G1712658 NA other upstream 1066205 17666280 ~ 17668586 (+)
LOC110501009 LOC105020375 other upstream 1791002 16914013 ~ 16973778 (+)
LOC110499863 tap26 other upstream 1993573 16740369 ~ 16742407 (+)
G1714090 NA other downstream 648848 19384972 ~ 19754609 (+)
nmes1 nmes1 other downstream 1373074 20109125 ~ 20113891 (+)
G1715392 NA other downstream 1822298 20558422 ~ 20558751 (+)
LOC110499980 LOC106576426 other downstream 2262474 20954576 ~ 21004439 (+)
G1717161 LOC106576319 other downstream 3439839 22175963 ~ 22180897 (+)

Expression


Co-expression Network