G1713793


Basic Information

Item Value
gene id G1713793
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 18824446 ~ 18825190 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1963467
gggatactataaaatgttgttgggtctgtaaccatgaggaaaggatactatataatgttgttgggtatgtaaccatgaggaggggatactatataatgttgttgggtctgtaaccatgaggagatactatataatgttgttgggtatgtaaccatgaggaggggatactatataatgttgttgggtctgtaaccatgaggaggggatactatataatgttgttgggtctgtaaccatgaggaggggatactatataatattgCTGGGTCTGTAACcttgaggaggggatactat
>TU1963469
gggatactataaaatgttgttgggtctgtaaccatgaggaaaggatactatataatgttgttgggtatgtaaccatgaggaggggatactatataatgttgttgggtctgtaaccatgaggagatactatataatgttgttgggtatgtaaccatgaggaggggatactatataatgttgttgggtctgtaaccatgaggagatactatataatgttgttgggtatgtaaccatgaggaggggatactatataatgttgttgggtctgtaaccatgaggaggggatactatataatgttgttgggtctgtaaccatgaggaggggatactatataatattgCTGGGTCTGTAACcttgaggaggggatactat
>TU1963470
gggatactataaaatgttgttgggtctgtaaccatgaggaaaggatactatataatgttgttgggtatgtaaccatgaggaggggatactatataatgttgttgggtctgtaaccatgaggagggtctgtaaccatgaggaagggatactataaaatgttgttgggtctgtaaccatgaggaaaggatactatataatgttgttgggtatgtaaccatgaggaggggatactatataatgttgttgggtctgtaaccatgaggagatactatataatgttgttgggtatgtaaccatgaggaggggatactatataatgttgttgggtctgtaaccatgaggaggggatactatataatgttgttgggtctgtaaccatgaggaggggatactatataatattgCTGGGTCTGTAACcttgaggaggggatactat
>TU1963468
gggatactataaaatgttgttgggtctgtaaccatgaggaaaggatactatataatgttgttgggtatgtaaccatgaggaggggatactatataatgttgttgggtctgtaaccatgaggagatactatataatgttgttgggtatgtaaccatgaggaggggatactatataatgttgttgggtctgtaaccatgaggaggggatactatataatgttgttgggtct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1963467 False 294 lncRNA 0.39 2 18824446 18825190
TU1963469 False 373 lncRNA 0.39 3 18824446 18825190
TU1963470 False 436 lncRNA 0.40 2 18824446 18825190
TU1963468 True 229 lncRNA 0.38 2 18824899 18825190

Neighbor

gene id symbol gene type direction distance location
LOC110500916 LOC106609043 coding downstream 116789 18701914 ~ 18707657 (-)
LOC110499898 scyl2 coding downstream 122671 18683391 ~ 18701775 (-)
LOC110499895 LOC106609039 coding downstream 166754 18654035 ~ 18657692 (-)
LOC110499883 LOC106576497 coding downstream 592257 18203539 ~ 18232189 (-)
LOC110499880 LOC106576467 coding downstream 690095 18130099 ~ 18134351 (-)
LOC110501015 LOC106609565 coding upstream 38353 18863543 ~ 19171552 (-)
LOC110501016 LOC106609564 coding upstream 348903 19174093 ~ 19221344 (-)
LOC110499908 LOC106609563 coding upstream 402808 19227998 ~ 19234102 (-)
LOC110499909 LOC106609560 coding upstream 412928 19238118 ~ 19256001 (-)
LOC110501018 LOC106576372 coding upstream 430970 19256160 ~ 19294094 (-)
G1713769 NA non-coding downstream 40557 18782904 ~ 18783889 (-)
G1713755 NA non-coding downstream 58067 18765460 ~ 18766379 (-)
G1713742 NA non-coding downstream 86992 18736897 ~ 18737454 (-)
G1713741 NA non-coding downstream 87605 18736396 ~ 18736841 (-)
G1713726 NA non-coding downstream 127613 18696506 ~ 18696833 (-)
G1713801 NA non-coding upstream 13098 18838288 ~ 18840115 (-)
G1713806 NA non-coding upstream 21079 18846269 ~ 18850985 (-)
G1713815 NA non-coding upstream 33908 18859098 ~ 18859394 (-)
G1713819 NA non-coding upstream 37662 18862852 ~ 18863173 (-)
G1714233 NA non-coding upstream 41551 18866741 ~ 18867008 (-)
G1713719 NA other downstream 155121 18668834 ~ 18669325 (-)
G1713637 NA other downstream 218929 18519287 ~ 18605517 (-)
G1713604 NA other downstream 353629 18470513 ~ 18470817 (-)
G1712424 NA other downstream 1528711 17295519 ~ 17295735 (-)
G1714475 NA other upstream 626010 19400335 ~ 19453678 (-)
G1714470 NA other upstream 778981 19599461 ~ 19617954 (-)
G1714755 NA other upstream 1077595 19902785 ~ 19903457 (-)
G1715085 LOC106609522 other upstream 1169481 19994671 ~ 19995602 (-)
G1715091 LOC106576402 other upstream 1186120 20011310 ~ 20025695 (-)

Expression


Co-expression Network