XLOC_003658 (si:dkey-264d12.1)


Basic Information

Item Value
gene id XLOC_003658
gene name si:dkey-264d12.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 40032790 ~ 40072301 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007114
TGGAGGCGCGTGAGAAACTCTACATCATTCTCTTTGTTTTGACTGAGAACAAAAGTAGCAGCCAAAGTCAAACTGTCATTGAGTGAAGAAAAACTGTGGAAACATGAAGAACAGCGGACACAGAGCTCAGACCGGAGAGAAGAGGATGCTGTGATTGACTGCAGTCCAACAAAACACGAGAGTGTGCGTGTCTTTTGTCGTGTGTCACGCCTGACcgtctatgtgtttgtgtgtgtgtgcgtgaatgagacGCGACTTTCACGGGTCTGCGCGTGTCTGGAGTGACAGAAGAGGGTTTCCACATCATGAGACTGTGAGACTGGGGGGATTCAGCCATGGCGGAAACCGATATTGACAAATCTCACCTGCCTGGTGTTTATGACGTGTGCCAGTGTTTCTCCGTTTTAGAGGATGGTGCTTTGGCTCAAAGTCTTCAAGAGCAGGAAATCGAGCATTTCTACAGCACTAACATCCAGAAGAACCAGACAGTGCAGAACGATGTTCGCTTGGCCCGAAGACTccaggaggaagaggaagagcgGGCAAATCTACAGCAGATAGAGGAAGAGGACTGTAGATATGCACTGATGATCCAGCAACAGCTGCAGAGATGTGCAGAGGAGGCCAGGAGACAAGAAAAACAGGATGAGGAAATCGCTAAACAGCtgcaggaagaagaagaaatggaGATGAGAAGACAAAGAGCCGCCTCTGGTTATGAGGACAACGACTGTCCTTCTCCTCTGTGTCAAgGTTTGGGAGTGTGGGAGCAGGTTCTCCAGGATGCTGAACTGGCCCGCAGACTTCAGGAGGAGGACATGATGCCTCAAAGAGACCAGTTTCATCAGAGACCTTCTGGTTCAGAAGTGGACTTCATTGCAGCACAAGTGGCTCAAGATGAGGAGATCGCAAACTACATGCAGCGGCGCCAGAGAAGAGTGAACCACAAAGCACAAGAGCTGGAGATCCAGAGCAGATCTGATGAAGAAGGCAGAGATGAAGAAAACACAACCACCAGGAAGGCTCTTCAGATGCTGCGAGAGCGGCTGAACTCAGACGGCCTTCATTCACCTGCGGAAGAAGATGATTTCACCATCCAAACTCTTCCAGCAAGCCCGTCATGCACTGCGCTTAAAAACCAACACATTCACAACATAGCAGAGGAACTGGACCCAACATTCAAGGCTAGGAAACGTGAGAGTCAAATTACCAGCAGTCCTTCCACAGCAGGTCTGTGTTTGGCCCCTCGTAACCCACACAGCATCTTCTATGACTATTTACCAGAACCCACCTTCATACCACCCATGAAACGGCAGAGTGACAAAGCCGCCCgacaaaaagccaaagacaaGAAAGAGAACTGTAAACAGCAGTGAATGGAGAACATGTTAACTGTTAGTCTCCTGAGTGCATCAGCAAGTAAGGTATAATCCATTTCAGGGACACATATTAATCTGTTACACTGAGAGTATTTACACTACACCGCTTGCAACTAAACATGTAAACAATGCAGGATTTTAGGGGTCTTTTGAAAAGAGATTTCAAATGAATCCAGACTCATTCTAATTACATATCACTGTATACatatctggagagcaccaaatatgtc
>TCONS_00007115
gctccggtttcccctacaagtccaaacacacgtggtataggctaaattgaccgtagtggatgagggtgtatggatgtttcccagtactgggttgcagctggaacggcaatccgctgtgtaaaacatatgcaggataagttggcggttcattctgctgtgggggaCCCcaagttaataaagggactaagccgaaaagaaaatgaatgattgaacataTATTTCCTGGTTATTCAAAAGCATCAAAGCGACTCTCCATTGCTTTCAGGAGCTGTTTCTGCTTTAAACCCGGCTCTAATATTAAGTTGCACAACAGTGACCCTCGTCATGAACAAAAACTCTTTTCATGGCATTTTGTTTAAGTATGCGTATACGCCAGGCTTTATGAAACAAGCTTGTGTCCTGAGTGCCCGTGTCAGCTTTTCCATGCCGGATCAGGGTGGAAGAGAACTAGCGGACATTTATTTTCCTAACCTTTCTTTCATTCTTGAATCCTTATGCTTGAGTATAAGCGCTGTTTACTAGAAGAGCTGACCGACTGACCTTCAGCACATAGGATGAGTCCACAATGTTCATGCTTCATGACAGTAGACAGAGCTTAACAAACAGACGCAGATGCATCATTAAAAATGTGTGCCAGTGTTTCTCCGTTTTAGAGGATGGTGCTTTGGCTCAAAGTCTTCAAGAGCAGGAAATCGAGCATTTCTACAGCACTAACATCCAGAAGAACCAGACAGTGCAGAACGATGTTCGCTTGGCCCGAAGACTccaggaggaagaggaagagcgGGCAAATCTACAGCAGATAGAGGAAGAGGACTGTAGATATGCACTGATGATCCAGCAACAGCTGCAGAGATGTGCAGAGGAGGCCAGGAGACAAGAAAAACAGGATGAGGAAATCGCTAAACAGCtgcaggaagaagaagaaatggaGATGAGAAGACAAAGAGCCGCCTCTGGTTATGAGGACAACGACTGTCCTTCTCCTCTGTGTCAAgGTTTGGGAGTGTGGGAGCAGGTTCTCCAGGATGCTGAACTGGCCCGCAGACTTCAGGAGGAGGACATGATGCCTCAAAGAGACCAGTTTCATCAGAGACCTTCTGGTTCAGAAGTGGACTTCATTGCAGCACAAGTGGCTCAAGATGAGGAGATCGCAAACTACATGCAGCGGCGCCAGAGAAGAGTGAACCACAAAGCACAAGAGCTGGAGATCCAGAGCAGATCTGATGAAGAAGGCAGAGATGAAGAAAACACAACCACCAGGAAGGCTCTTCAGATGCTGCGAGAGCGGCTGAACTCAGACGGCCTTCATTCACCTGCGGAAGAAGATGATTTCACCATCCAAACTCTTCCAGCAAGCCCGTCATGCACTGCGCTTAAAAACCAACACATTCACAACATAGCAGAGGAACTGGACCCAACATTCAAGGCTAGGAAACGTGAGAGTCAAATTACCAGCAGTCCTTCCACAGCAGGTCTGTGTTTGGCCCCTCGTAACCCACACAGCATCTTCTATGACTATTTACCAGAACCCACCTTCATACCACCCATGAAACGGCAGAGTGACAAAGCCGCCCgacaaaaagccaaagacaaGAAAGAGAACTGTAAACAGCAGTGA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-141215-69 No description available

Ensembl:

ensembl_id ENSDARG00000090973

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007114 False 1609 mRNA 0.47 12 40032790 40072301
TCONS_00007115 True 1621 mRNA 0.47 11 40043569 40072068

Neighbor

gene id symbol gene type direction distance location
XLOC_003657 per3 coding upstream 11710 39959039 ~ 40021080 (+)
XLOC_003656 vamp3 coding upstream 75865 39928828 ~ 39956925 (+)
XLOC_003655 NA coding upstream 105918 39576541 ~ 39926872 (+)
XLOC_003654 NA coding upstream 553523 39373712 ~ 39479267 (+)
XLOC_003653 NA coding upstream 742156 39287369 ~ 39290634 (+)
XLOC_003659 NA coding downstream 39180 40111481 ~ 40116646 (+)
XLOC_003660 si:dkey-264d12.5 coding downstream 75880 40148181 ~ 40168378 (+)
XLOC_003661 si:ch211-193i15.1 coding downstream 135938 40208239 ~ 40215554 (+)
XLOC_003662 NA coding downstream 147754 40220055 ~ 40434080 (+)
XLOC_003663 si:dkey-207b20.2 coding downstream 234278 40306579 ~ 40311746 (+)
XLOC_003369 CR854846.2 misc upstream 23909708 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 27320794 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 27338527 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 27347191 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 27352762 12679732 ~ 12680028 (+)
XLOC_003652 NA non-coding upstream 748814 39262536 ~ 39283976 (+)
XLOC_003651 NA non-coding upstream 751899 39187531 ~ 39280891 (+)
XLOC_003669 NA non-coding downstream 792654 40864955 ~ 40865542 (+)
XLOC_003670 CABZ01044767.1 non-coding downstream 816879 40889180 ~ 40889294 (+)
XLOC_003671 NA non-coding downstream 819380 40891681 ~ 40956123 (+)

Expression


Co-expression Network