G1714126 (LOC106609549)


Basic Information

Item Value
gene id G1714126
gene name LOC106609549
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 19360186 ~ 19360889 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1963940
GTCCCAATATGCTCATGTTGTCTGTGTTGAGGACACCATGACAGAAGCCAACACATTGCCACTGGGCCACCAGACGAGCCGTCCGCACTGTCACCTCTTTGAAAAATGCTGTGTTCCTCTCTTTGCGGTTGCCGTGGCATCGTTGGATGTCAGGGTAAAAGGTGTCGATGACGTAGTCCACTAGCTGAGCCCGAATGTCGTGGCGCCCTGGACTGGGACCCTGTCGGCCTGAAAACTCATCCCGAGACTGAAAGATCTCAAAGGACCCGAACCTGCACAAGCAAGTCAGCATTCAGTACCAAAAGCAGAGTTCATGGCtagtcagctagtcagccagtcagttagtcagccagtcagtcagctagtcagtcagtcagctagtcagcc

Function

NR:

description
PREDICTED: selenoprotein O-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1963940 True 387 lncRNA 0.53 3 19360186 19360889

Neighbor

gene id symbol gene type direction distance location
LOC110499913 NA coding upstream 22535 19331964 ~ 19337651 (+)
bik LOC106609559 coding upstream 54103 19302368 ~ 19306083 (+)
LOC118942896 NA coding upstream 81151 19260745 ~ 19279035 (+)
LOC110501017 LOC106609562 coding upstream 133552 19223437 ~ 19226634 (+)
LOC110499902 LOC106609566 coding upstream 519726 18770248 ~ 18840460 (+)
LOC118942905 NA coding downstream 24103 19384992 ~ 19388072 (+)
LOC110499932 NA coding downstream 64504 19425393 ~ 19431499 (+)
LOC118942906 NA coding downstream 348325 19709214 ~ 19709762 (+)
LOC110499917 LOC106576387 coding downstream 381235 19742124 ~ 19752304 (+)
LOC110499934 LOC106576387 coding downstream 395020 19755909 ~ 19761293 (+)
G1714082 NA non-coding upstream 5294 19353880 ~ 19354892 (+)
G1714087 NA non-coding upstream 18767 19340898 ~ 19341419 (+)
G1714074 NA non-coding upstream 38543 19321389 ~ 19321643 (+)
G1714066 LOC106576374 non-coding upstream 57957 19300825 ~ 19302229 (+)
G1714035 NA non-coding upstream 125132 19234838 ~ 19235054 (+)
G1714133 NA non-coding downstream 25560 19386449 ~ 19433764 (+)
G1714097 NA non-coding downstream 39148 19400037 ~ 19405559 (+)
G1714134 NA non-coding downstream 44767 19405656 ~ 19439604 (+)
G1714090 NA non-coding downstream 90015 19384972 ~ 19754609 (+)
G1714151 NA non-coding downstream 115007 19475896 ~ 19478051 (+)
G1713384 NA other upstream 622750 18734791 ~ 18737436 (+)
G1713262 NA other upstream 859312 18497147 ~ 18500874 (+)
si:dkey-159a18.1 LOC106609576 other upstream 1092678 18247128 ~ 18268691 (+)
G1712658 NA other upstream 1691600 17666280 ~ 17668586 (+)
LOC110501009 LOC105020375 other upstream 2416397 16914013 ~ 16973778 (+)
nmes1 nmes1 other downstream 748309 20109125 ~ 20113891 (+)
G1715392 NA other downstream 1197533 20558422 ~ 20558751 (+)
LOC110499980 LOC106576426 other downstream 1637709 20954576 ~ 21004439 (+)
G1717161 LOC106576319 other downstream 2815074 22175963 ~ 22180897 (+)

Expression


Co-expression Network