G1714470


Basic Information

Item Value
gene id G1714470
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 19599461 ~ 19617954 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1964372
CTTCTCTAAACTAAAGCTGGTAGGATTCCTCTGGTAGTGTTGTCTGTCCTCTGTGACTTTACCACCACTGTTAAATCTGagatcaacatgtttaataaaggaaTATACAACATGGATCACtatcactactgctgctgctgttgtctttCATATGGACAATATGGAGGAATACTAGCAACACTGATCTGATGCTGGACTGTACCTCCAGACTAGGAGAACCTGATACACAGAGGAAGGAAAAATACTACTATCTGGATTTAAGATACAATTCATATTTGTATTATCTAGAAACAGCTAATATGAAGTGTTTGTTCTACCTGGAAGATGTTAAAGTGTATTAGTGTTGATTATGATTCTGTATGAGTGATCTTCACTGTAACAGCTGCAGGATCACAACACAGAGAGCTTTATGTACCAGCAGTAATAGTGATTGTATCACTGTGGTGTACTTTTGGTAGCGGCACCAGACTTGATGTTGGAAGTAACAGTGCCCCCACCCTCGCCGTCCTGCCCCCCTCTAGTGAGGAGCTGTCCAGTACAACAACAGCCACACTGACGTGTCTGGCCAACAAGGGCTTCCCCTCAGACTGGACCATAAGATGGAAAGTGGACGGGACCAGCCAGAAGCAGGAGACCAGTCCCGGGGTCCTGGAGAAGGATGGCCTGTACAGCTGGAGCAGCACCCTGACTCTCACTGGCCTGGAGTGGACCAAGGCAGGAGAGGTGACCTGTGAAGCTCAGCAGAATTcccagactccagtcaccaagaCCTTGAGGAGGGCTGACTGTTAGGCCCCCTAGTCACACACCCCTGTGGAGAGAGGCTGCTGGTTCCTCTGCTTTGACTCTGTTCTGAGATCAGATGTTCTCTGTCTTTTGATCACTGACATGTCGAGTAACAGGGGGCTTTGCTTGAGTTCATGCGTCAGTCCTCTCTGTAGACTGAGATTGAATCGGTATTAGATTTGATGAGTTCTGTTTTGTTACTATTAGATACTGTAGGAATGTTTGCTTTGATGCTTTG
>TU1964374
TCTCATGTAAGTTCCTCTAATCAGTTAGTGAACACTTCTCTAAACTAAAGCTGGTAGGATTCCTCTGGTAGTGTTGTCTGTCCTCTGTGACTTTACCACCACTGTTAAATGTGagatcaacatgtttaataaaggaaTATACAACATGGATCACtatcactactgctgctgctgttgtctttCATATGGACAATATGGAGGAATACTAGCAACACTGATCTAATGCTGGACTGTACCTCCAGACTAGAAGAACCTGATACACAGAGGAAGGAAAAATGACTGAGATCTGGATTTAAGATACAATTCATATTTGTATTATCTAGAAACAGCTAATATGAAGTGTTTGTTCTACCTGGAAGATGTTAAAGTGTATTAGTGTTGATTATGATTCTGTATGAGTGATCTTCACTGTAACAGCTGCAGCATCACAACACAGAGAGGTTTTTGTACCAGCAGTAATAGTGATTGTATCACTGTGGTGTACTTTTGGTAGCGGCACCAGACTTGATGTTGGAAGTAACAGTGCCCCCACCCTCGCCGTCCTGCCCCCCTCTAGTGAGGAGCTGTCCAGTACAACAACAGCCACACTGACGTGTCTGGCCAACAAGGGCTTCCCCTCAGACTGGACCATAAGATGGAAAGTGGACGGGACCAGCCAGAAGCAGGAGACCAGTCCCGGGGTCCTGGAGAAGGATGGCCTGTACAGCTGGAGCAGCACCCTGACTCTCACTGGCCTGGAGTGGACCAAGGCAGGAGAGGTGACCTGTGAAGCTCAGCAGAATTcccagactccagtcaccaagaCCTTGAGGAGGGCTGACTGTTAGGCCCCCTAGTCACACACCCCTGTGGAGAGAGGCTGCTGGTTCCTCTGCTTTGACTCTGTTCTGAGATCAGATGTTCTCTGTCTTTTGATCACTGACATGTCGAGTAACAGGGGGCTTTGCTTGAGTTCATGCGTCAGTCCTCTCTGTAGACTGAGATTGAATCGGTATTAGATTTGATGAGTTCTGTTTTGTTACTATTAGATACTGTAGGAATGTTTGCTTTGATGCTTTG
>TU1964376
CTTCTCTAAACTAAAGCTGGTAGGATTCCTCTGGTAGTGTTGTCTGTCCTCTGTGACTTTACCACCACTGTTAAATCTGagatcaacatgtttaataaaggaaTATACAACATGGATCACtatcactactgctgctgctgttgtctttCATATGGACAATATGGAGGAATACTAGCAACACTGATCTGATGCTGGACTGTACCTCCAGACTAGGAGAACCTGATACACAGAGGAAGGAAAAATACTACTATCTGGATTTAAGATACAATTCATATTTGTATTATCTAGAAACAGCTAATATGAAGTGTTTGTTCTACCTGGAAGATGTTAAAGTGTATTAGTGTTGATTATGATTCTGTATGAGTGATCTTCACTGTAACAGCTGCAGCATCACAACACAGAGAGGTTTTTGTACCAGCAGTAATAGTGATTGTATCACTGTGGTGTACTTTTGGTAGCGGCACCAGACTTGATGTTGGAAGTAACAGTGCCCCCACCCTCGCCGTCCTGCCCCCCTCTAGTGAGGAGCTGTCCAGTACAACAACAGCCACACTGACGTGTCTGGCCAACAAGGGCTTCCCCTCAGACTGGACCATAAGATGGAAAGTGGACGGGACCAGCCAGAAGCAGGAGACCAGTCCCGGGGTCCTGGAGAAGGATGGCCTGTACAGCTGGAGCAGCACCCTGACTCTCACTGGCCTGGAGTGGACCAAGGCAGGAGAGGTGACCTGTGAAGCTCAGCAGAATTcccagactccagtcaccaagaCCTTGAGGAGGGCTGACTGTTAGGCCCCCTAGTCACACACCCCTGTGGAGAGAGGCTGCTGGTTCCTCTGCTTTGACTCTGTTCTGAGATCAGATGTTCTCTGTCTTTTGATCACTGACATGTCGAGTAACAGGGGGCTTTGCTTGAGTTCATGCGTCAGTCCTCTCTGTAGACTGAGATTGAATCGGTATTAGATTTGATGAGTTCTGTTTTGTTACTATTAGATACTGTAGGAATGTTTGCTTTGATGCTTTG
>TU1964373
CTTCTCTAAACTAAAGCTGGTAGGATTCCTCTGGTAGTGTTGTCTGTCCTCTGTGACTTTACCACCACTGTTAAATCTGagatcaacatgtttaataaaggaaTATACAACATGGATCACtatcactactgctgctgctgttgtctttCATATGGACAATATGGAGGAATACTAGCAACACTGATCTGATGCTGGACTGTACCTCCAGACTAGGAGAACCTGATACACAGAGGAAGGAAAAATACTACTATCTGGATTTAAGATACAATTCATATTTGTATTATCTAGAAACAGCTAATATGAAGTGTTTGTTCTACCTGGAAGATGTTAAAGTGTATTAGTGTTGATTATGATTCTGTATGAGTGATCTTCACTGTAACAGCTGCAGGATCACAACACAGAGAGCTTTATGTACCAGCAGTAATAGTGATTGTATCACTGTGGTGTACTTTTGGTAGCGGCACCAGACTTGATGTTGGAAGTAACAGTGCCCCCACCCTCACCGTCCTGCCCCCCTCTAGTGAGGAGCTGTCCAGTACAACAACAGCCACACTGATGTGTCTGGCCAACAAGGGCTTCCCCTCAGACTGGACCTTGAGCTGGAAAGTGGACGGGACCAGCCAGAAGCAGGAGACCAGTTCTAGGGTCCTGGAGAAGGATGGCCTGTACAGCTGGAGCAGCACCCTGACTCTCACTACCCAGGAGTGGACCAAGGCAGGAGAGGTGACCTGTGAAGCCCAGCAGAAATcccagactccagtcaccaagaCCTTGAGGAGGGCTGACTGTTCTGGGTAGGCCCCCTAGTCACACACCCCTGTGGATAGAGGCTGCTGGTTCCTCTGCTTTGACTCTGTTCTGAGATCAGATGTTCTCTGTCTTATTGATCACTGACATGTAGACTAACAGGGGGCTTTGCTTGAGTTCATGTGTCAATCCTCTCTGTAGACTGATGTTGTATCAGTGTTAGATGTGATGTGTTCTGTTATATAACTATTAGAATCTGTAGGAATGTTTGCTTTGATGCTTTGATGAATAGATGAAAATAAAGACTTATCTTAGAAACAA
>TU1964375
gaggtttTTGTACGGCTCTGTATCACTGTGTGAACACCCAGACACTGTTGGAGTAGTGTGCACTctgacagtagtaatctcctgcatcttcagcctggactccactgatggtcagagtgaagtcaGTCCCAGATCCACTACCACTGAATCTAGATGGAGTCCCAGTGAACTTGTTGTTTATCTTATAAATGAGGAGTTTAGGAGCTTCTCCAGGTCTCTGTTGGTACCAGTGCAGGTAATTACTGTATATATCACTGCTGAGTTTACAGCCAATGTTGACCGTCTCTCCATTGCCATCAGCTTTCACTGCAGGTGTCTGAGTCAGAGTGTACTGTCCTCTGGATTCTGAATATTGAATGGTAACAGTGCCCCCACCCTCACCGTCCTGCCCCCCTCTAGTGAGGAGCTGTCCAGTACAACAACAGCCACACTGATGTGTCTGGCCAACAAGGGCTTCCCCTCAGACTGGACCTTGAGCTGGAAAGTGGACGGGACCAGCCAGAAGCAGGAGACCAGTTCTAGGGTCCTGGAGAAGGATGGCCTGTACAGCTGGAGCAGCACCCTGACTCTCACTACCCAGGAGTGGACCAAGGCAGGAGAGGTGACCTGTGAAGCCCAGCAGAAATcccagactccagtcaccaagaCCTTGAGGAGGGCTGACTGTTCTGGGTAGGCCCCCTAGTCACACACCCCTGTGGATAGAGGCTGCTGGTTCCTCTGCTTTGACTCTGTTCTGAGATCAGATGTTCTCTGTCTTATTGATCACTGACATGTAGACTAACAGGGGGCTTTGCTTGAGTTCATGTGTCAATCCTCTCTGTAGACTGATGTTGTATCAGTGTTAGATGTGATGTGTTCTGTTATATAACTATTAGAATCTGTAGGAATGTTTGCTTTGATGCTTTGATGAATAGATGAAAATAAAGACTTATCTTAGAAACAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1964372 False 1024 lncRNA 0.46 2 19599461 19606680
TU1964374 False 1059 lncRNA 0.46 2 19599461 19601902
TU1964376 False 1024 lncRNA 0.46 3 19599461 19606680
TU1964373 False 1068 TUCP 0.45 2 19604171 19606680
TU1964375 True 946 TUCP 0.48 2 19604171 19617954

Neighbor

gene id symbol gene type direction distance location
LOC118942998 LOC106576333 coding downstream 203393 19393748 ~ 19396068 (-)
LOC110499916 LOC106609549 coding downstream 236310 19355510 ~ 19363151 (-)
LOC110499914 LOC106609550 coding downstream 244730 19351820 ~ 19354731 (-)
LOC110501020 LOC106609550 coding downstream 251198 19337875 ~ 19348263 (-)
LOC110499911 LOC106576376 coding downstream 278578 19310298 ~ 19320883 (-)
LOC118942907 NA coding upstream 78574 19684836 ~ 19700486 (-)
LOC110499938 LOC106609532 coding upstream 215571 19822222 ~ 19831727 (-)
LOC110499939 LOC106609539 coding upstream 227063 19833743 ~ 19842238 (-)
LOC110501023 LOC106576392 coding upstream 237211 19843806 ~ 19858976 (-)
LOC110499951 NA coding upstream 350561 19957241 ~ 19962354 (-)
G1714484 NA non-coding downstream 16829 19513604 ~ 19582632 (-)
G1714471 NA non-coding downstream 19724 19576877 ~ 19579737 (-)
G1714530 NA non-coding downstream 58786 19533728 ~ 19540675 (-)
G1714497 NA non-coding downstream 71532 19518853 ~ 19527929 (-)
G1714477 NA non-coding downstream 72697 19524345 ~ 19526764 (-)
G1714547 NA non-coding upstream 4011 19610691 ~ 19611421 (-)
G1714549 NA non-coding upstream 7330 19614010 ~ 19636787 (-)
G1714490 NA non-coding upstream 39025 19645705 ~ 19653641 (-)
G1714493 NA non-coding upstream 116536 19723216 ~ 19725258 (-)
G1714475 NA other downstream 145783 19400335 ~ 19453678 (-)
G1713755 NA other downstream 833657 18765460 ~ 18766379 (-)
G1713719 NA other downstream 930136 18668834 ~ 18669325 (-)
G1713637 NA other downstream 993944 18519287 ~ 18605517 (-)
G1713604 NA other downstream 1128644 18470513 ~ 18470817 (-)
G1714755 NA other upstream 296105 19902785 ~ 19903457 (-)
G1715085 LOC106609522 other upstream 387991 19994671 ~ 19995602 (-)
G1715091 LOC106576402 other upstream 404630 20011310 ~ 20025695 (-)
LOC118942908 LOC106609500 other upstream 937409 20544089 ~ 20545776 (-)
LOC100301658 LOC100301658 other upstream 1844437 21451117 ~ 21452490 (-)
G1714473 NA non-coding downstream 1027 19602406 ~ 19603144 (-)
G1714578 NA non-coding upstream 106192 19724146 ~ 19727204 (-)
G1714603 LOC106576387 non-coding upstream 138766 19756720 ~ 19756952 (-)

Expression


Co-expression Network