G1715091 (LOC106576402)


Basic Information

Item Value
gene id G1715091
gene name LOC106576402
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 20011310 ~ 20025695 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1965113
GTTCGTCAAAGCACAGATAGATGAGTAGAACATCTTTGGTAAAAGTAGTGGGATGTGCAAATGTTGGCTATCTATAGAAAACGGGTTTAGTTTGCTAGCTAACTAGTATAGTATTAGCTAGCTTGCATAAAGATATCAACCTTTTTAGCTACGTTGTAAACCCTCAGTGTATATTCTAGGCTTGGTCACTCCTAACATTAGCATCAAACTCTTTAGGTAGCTAACAGTAGCTTGTTTCAGTGGCTTCTTTTTCTTTGCAAACTAGCTATGGATATCATTATTGATCCAGCATCAGAACAAGatctccctctgttctccttgCGTCTCCTGGTTCCACCTCTACGACTGATGTCAGCTTTCATGTGGCAAGTGGCTCAAGAGCGTAATGTGATGCAGTATGGGAAGCTGGAGGAGTTTGTGACTTTGGTGACAGAGATGGTTCCAGAGCTGCTGAGCTCCAGGCAGAGGACCCAACTCATCCTGGGACTGAGGGCAAGGATGGTTTTAGAGTTGTGTTGCAGTGTGGGCGGAGCTGACCTCCTGACCATCCAGGCCCACCTGGACATAATCCACACGTTGACAGAAAAATCCTTACACAAAGAGAGTCATGGTGATGAATTGGAGGCTTCAGATTCTAACTTTGTGGAGCTAGTCCAAACCCTGCTGGAAGACCCTTCTGAGAGGGAGCATTTCTTCCAGGAGGTGTTCCCAGTCCACTATGGCCCTCGGTATGACACAGCGCTGCAGACACT
>TU1965116
CTGGATCTAGCAACCTCTATACAAAACGGTTTTATTTATCTTAGCTAACTAGGGTATTGTTAGCTTGAGTACATTTGTCAACTTTTTTATTTACGTTGCAATCGCTTTAATATAACGTATATTCTAGGCTTGGTCGCACTATCTAACGTTAACATCAAACTTTTTAGCTAGCTTGTTTCGAGGGCTTTTTGCTTTGCAAACTAGCCATGGATAACATTATTGATCCAACATCAGAACAAGgtctccctctgttctccttgCGTCTCCTGGTTCCACCTCTACGCCTGATGTGCGCTTTCATGTGGCAAGTGACTCAACAGCGTAATGTGATGCAGTATGGAAAGCTGGAGGAATTTGTGACTTTGGTGACAGAGATGGTTCCAGAGCTGCTGAACTCCAGGCAGAGGACCCAACTCATCCTGGGACTGAGAGCAAGGATGGTTTTAGAGTTGTGTTGCAGTGTGGGCGGAGCTGACCTCCTGACCATCCAGGCCCACCTGGACATAATCCACACGTTGACAGAAAAATCCTTACACAAAGAGAGTCATGGTGATGAATTGGAGGCTTCAGATTCTAACTTTGTGGAGCTAGTCCAAACCCTGCTGGAAGACCCTTCTGAGAGGGAGCATTTCTTCCAGGAGGTGTTCCCAGTCCACTATGGCCCTCGGTATGACACAGCGCTGCAGACACT

Function

NR:

description
zinc finger protein 829-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1965113 False 752 TUCP 0.46 5 20011310 20013426
TU1965116 True 691 TUCP 0.46 5 20011310 20025695

Neighbor

gene id symbol gene type direction distance location
LOC110499951 NA coding downstream 48956 19957241 ~ 19962354 (-)
LOC110501023 LOC106576392 coding downstream 152334 19843806 ~ 19858976 (-)
LOC110499939 LOC106609539 coding downstream 169072 19833743 ~ 19842238 (-)
LOC110499938 LOC106609532 coding downstream 179583 19822222 ~ 19831727 (-)
LOC118942907 NA coding downstream 321497 19684836 ~ 19700486 (-)
LOC110499960 LOC106609516 coding upstream 275745 20301440 ~ 20334668 (-)
LOC110499961 LOC106576411 coding upstream 309499 20335194 ~ 20360136 (-)
LOC110499964 LOC106609512 coding upstream 390704 20416399 ~ 20419086 (-)
LOC110499972 LOC106609508 coding upstream 446341 20472036 ~ 20476741 (-)
pex26 LOC106609506 coding upstream 455627 20481322 ~ 20484937 (-)
G1715092 NA non-coding downstream 5029 20004114 ~ 20006281 (-)
G1715089 NA non-coding downstream 9049 20001784 ~ 20002261 (-)
G1715087 NA non-coding downstream 10120 20000959 ~ 20001190 (-)
G1715084 NA non-coding downstream 17288 19993820 ~ 19994022 (-)
G1715082 NA non-coding downstream 18423 19992297 ~ 19992887 (-)
G1715098 NA non-coding upstream 1220 20026915 ~ 20027148 (-)
G1715114 NA non-coding upstream 25618 20051313 ~ 20051554 (-)
G1715138 NA non-coding upstream 29486 20055181 ~ 20055388 (-)
G1715139 NA non-coding upstream 31246 20056941 ~ 20057226 (-)
G1715142 NA non-coding upstream 35877 20061572 ~ 20061803 (-)
G1715085 LOC106609522 other downstream 15708 19994671 ~ 19995602 (-)
G1714755 NA other downstream 107853 19902785 ~ 19903457 (-)
G1714470 NA other downstream 393356 19599461 ~ 19617954 (-)
G1714475 NA other downstream 557632 19400335 ~ 19453678 (-)
G1713755 NA other downstream 1245506 18765460 ~ 18766379 (-)
LOC118942908 LOC106609500 other upstream 518394 20544089 ~ 20545776 (-)
LOC100301658 LOC100301658 other upstream 1425422 21451117 ~ 21452490 (-)
LOC110499990 lhfpl3 other upstream 1471962 21496754 ~ 21533441 (-)
G1716815 NA other upstream 1738844 21764539 ~ 21765210 (-)
G1716873 NA other upstream 1831744 21857439 ~ 21863447 (-)

Expression


Co-expression Network