G1715039


Basic Information

Item Value
gene id G1715039
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 20400799 ~ 20401003 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1965057
acactggagagATGAAAATTGGAACAAAATGTTATGGACAGatgaatctaagtttgaggtgttcggatcacaaagaagaacattcttgagacgcagaaaaaattaAAAGATCCTGGAGGAGTGCTTaatgccatctgtcaagcatggtggaggcaatgtgatggtctgggggtgctttggtggtggtaaagtgggagaatTGTAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1965057 True 205 lncRNA 0.42 1 20400799 20401003

Neighbor

gene id symbol gene type direction distance location
LOC110499962 LOC106609514 coding upstream 7986 20364847 ~ 20392819 (+)
LOC110499958 LOC106609517 coding upstream 105803 20267697 ~ 20294996 (+)
LOC110499957 LOC106609518 coding upstream 145634 20220435 ~ 20255165 (+)
LOC110499956 LOC106576407 coding upstream 203816 20193108 ~ 20196983 (+)
LOC110499954 LOC106609519 coding upstream 224113 20125598 ~ 20176686 (+)
LOC110499963 LOC106609510 coding downstream 2686 20403689 ~ 20414330 (+)
med21 LOC106609513 coding downstream 16484 20417487 ~ 20421625 (+)
LOC110499971 LOC106609511 coding downstream 22333 20423336 ~ 20432065 (+)
LOC110499965 LOC106609509 coding downstream 38849 20439852 ~ 20456984 (+)
si:ch73-352p4.8 LOC106609505 coding downstream 85338 20486341 ~ 20494712 (+)
G1715009 LOC106609515 non-coding upstream 63178 20337098 ~ 20337621 (+)
G1715010 NA non-coding upstream 66178 20334293 ~ 20334621 (+)
G1714940 NA non-coding upstream 218603 20181834 ~ 20182196 (+)
G1714922 NA non-coding upstream 282004 20118523 ~ 20118795 (+)
G1715040 NA non-coding downstream 586 20401589 ~ 20401806 (+)
G1714871 NA non-coding downstream 57127 20458130 ~ 20458523 (+)
G1715051 NA non-coding downstream 66075 20467078 ~ 20467371 (+)
G1715053 NA non-coding downstream 68205 20469208 ~ 20469540 (+)
G1715066 NA non-coding downstream 139227 20540230 ~ 20540450 (+)
nmes1 nmes1 other upstream 286908 20109125 ~ 20113891 (+)
G1714090 NA other upstream 776885 19384972 ~ 19754609 (+)
G1713384 NA other upstream 1663363 18734791 ~ 18737436 (+)
G1713262 NA other upstream 1899925 18497147 ~ 18500874 (+)
si:dkey-159a18.1 LOC106609576 other upstream 2133291 18247128 ~ 18268691 (+)
G1715392 NA other downstream 157419 20558422 ~ 20558751 (+)
LOC110499980 LOC106576426 other downstream 597595 20954576 ~ 21004439 (+)
G1717161 LOC106576319 other downstream 1774960 22175963 ~ 22180897 (+)
G1717516 NA other downstream 2317916 22718919 ~ 22784445 (+)
G1717520 NA other downstream 2419749 22820752 ~ 22879923 (+)

Expression


Co-expression Network