G1715696 (LOC106582599)


Basic Information

Item Value
gene id G1715696
gene name LOC106582599
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 20796012 ~ 20796250 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1965769
ctgcctgaccaaagccccggataaacctccggtagtagttggcaaaccctatgaaccgctgcacctcctttaccgtggttggagtcggccaattacgcacggctgaaatgcagtcattttccatctccacccctgacgcGGAAaggcggtaccctaggaaggagaaggactgttggaagaacagacatttctcagccttgacatacaggtcatgctccaacagtcgaccaagcaaaCTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1965769 True 239 lncRNA 0.53 1 20796012 20796250

Neighbor

gene id symbol gene type direction distance location
LOC110499976 LOC106609498 coding upstream 164249 20587230 ~ 20631763 (+)
LOC110499967 LOC106609502 coding upstream 259587 20502117 ~ 20536425 (+)
rhno1 cl032 coding upstream 294042 20499181 ~ 20501970 (+)
si:ch73-352p4.8 LOC106609505 coding upstream 301300 20486341 ~ 20494712 (+)
LOC110499965 LOC106609509 coding upstream 339028 20439852 ~ 20456984 (+)
LOC110499978 mtpn coding downstream 75816 20872066 ~ 20890939 (+)
LOC110499979 LOC106576425 coding downstream 135223 20931473 ~ 20943290 (+)
LOC110499980 LOC106576426 coding downstream 158326 20954576 ~ 21004439 (+)
LOC110501024 LOC106609493 coding downstream 221957 21018207 ~ 21039654 (+)
LOC110499983 magi2 coding downstream 291104 21087354 ~ 21350552 (+)
G1715383 NA non-coding upstream 248872 20546865 ~ 20547140 (+)
G1715066 NA non-coding upstream 255562 20540230 ~ 20540450 (+)
G1715053 NA non-coding upstream 326472 20469208 ~ 20469540 (+)
G1715051 NA non-coding upstream 328641 20467078 ~ 20467371 (+)
G1714871 NA non-coding upstream 337489 20458130 ~ 20458523 (+)
G1715703 NA non-coding downstream 4370 20800620 ~ 20801129 (+)
G1715705 NA non-coding downstream 9370 20805620 ~ 20805915 (+)
G1715713 NA non-coding downstream 18055 20814305 ~ 20814522 (+)
G1715727 NA non-coding downstream 26561 20822811 ~ 20823024 (+)
G1715728 NA non-coding downstream 27853 20824103 ~ 20824441 (+)
G1715392 NA other upstream 237261 20558422 ~ 20558751 (+)
nmes1 nmes1 other upstream 682121 20109125 ~ 20113891 (+)
G1714090 NA other upstream 1172098 19384972 ~ 19754609 (+)
G1713384 NA other upstream 2058576 18734791 ~ 18737436 (+)
G1713262 NA other upstream 2295138 18497147 ~ 18500874 (+)
G1717161 LOC106576319 other downstream 1379713 22175963 ~ 22180897 (+)
G1717516 NA other downstream 1922669 22718919 ~ 22784445 (+)
G1717520 NA other downstream 2024502 22820752 ~ 22879923 (+)
G1717517 NA other downstream 2053642 22849892 ~ 22851407 (+)

Expression


Co-expression Network