G1716267


Basic Information

Item Value
gene id G1716267
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 21836200 ~ 21839060 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1966391
atacaagtactgtctgcattaggtcaatacaagtactgtctacgttaggtcaatacaagtactgtctgcattaggtcaatacaagtactgtctacgttaggtcaatacaagtactgtctgcattaggtcaatacaagtactgtctacgttaggtcaatacaagtactgtctgcattaggtcaatacaaGTACTGTCTACGTTAGGTCAATACAAGTACTGTCTGCATTAGGTCAGTACAAGGACTGTCTACGTTAGGTCAATACAAGTACTGTCtacgttaggtcaataaaagtactgtctacgttaggtcaataaaagtactgtctacgttaggtcaata
>TU1966392
ACTgtctgcattaggtcaatacaagtactgtctacgttaggtcaatacaagtactgtctacgttaggtcaatacaagtactgtctacgttaggtcaataaaagtactgtctacgttaggtcaataaaagtactgtctacgttaggtcaataaaagtactgtctacgttaggtcaatacaagtactgtctacgttaggtcaataaaagtactgtctacgTTAGGTCAATACAAGGACTGTCtacgttaggtcaataaaagtactgtctacgTTAGGTCAGTACAAGGACTGTCTACGTTAGGTCAATACAAGTACTGTCtacgttaggtcaataaaagtactgtctacgttaggtcaataaaagtactgtctacgttaggtcaata

Function

NR:

description
uncharacterized protein LOC110491270, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1966391 False 341 lncRNA 0.38 2 21836200 21839060
TU1966392 True 385 lncRNA 0.37 2 21836988 21839060

Neighbor

gene id symbol gene type direction distance location
LOC110499995 hcls1 coding upstream 244527 21582932 ~ 21591673 (+)
LOC110499994 LOC106609404 coding upstream 253387 21558541 ~ 21582813 (+)
LOC110499992 orc5 coding upstream 289695 21535960 ~ 21546505 (+)
LOC110499987 LOC106609484 coding upstream 344595 21488422 ~ 21491605 (+)
LOC110501025 LOC106576014 coding upstream 350480 21455845 ~ 21485720 (+)
LOC118942910 NA coding downstream 11886 21850946 ~ 21855948 (+)
LOC110499998 LOC106576327 coding downstream 81457 21920517 ~ 21948205 (+)
LOC100653451 LOC106609409 coding downstream 152158 21991218 ~ 22007807 (+)
LOC110500917 NA coding downstream 170906 22009966 ~ 22011099 (+)
LOC110501027 LOC106609383 coding downstream 278921 22117981 ~ 22119671 (+)
G1716154 NA non-coding upstream 190340 21645628 ~ 21645860 (+)
G1716125 NA non-coding upstream 239097 21596896 ~ 21597103 (+)
G1715905 cl031 non-coding upstream 243096 21591688 ~ 21593104 (+)
G1716118 NA non-coding upstream 281685 21554264 ~ 21554515 (+)
G1715907 NA non-coding upstream 282439 21550541 ~ 21553761 (+)
G1716270 NA non-coding downstream 2221 21841281 ~ 21843712 (+)
LOC110499997 LOC106576329 non-coding downstream 27947 21650654 ~ 21869745 (+)
G1716881 NA non-coding downstream 33060 21872120 ~ 21872339 (+)
G1716883 NA non-coding downstream 37244 21876304 ~ 21876625 (+)
G1716885 NA non-coding downstream 38814 21877874 ~ 21878169 (+)
LOC110499980 LOC106576426 other upstream 836063 20954576 ~ 21004439 (+)
G1715392 NA other upstream 1277449 20558422 ~ 20558751 (+)
nmes1 nmes1 other upstream 1722309 20109125 ~ 20113891 (+)
G1714090 NA other upstream 2212286 19384972 ~ 19754609 (+)
G1713384 NA other upstream 3098764 18734791 ~ 18737436 (+)
G1717161 LOC106576319 other downstream 336903 22175963 ~ 22180897 (+)
G1717516 NA other downstream 879859 22718919 ~ 22784445 (+)
G1717520 NA other downstream 981692 22820752 ~ 22879923 (+)
G1717517 NA other downstream 1010832 22849892 ~ 22851407 (+)
LOC110500038 LOC106609436 other downstream 1175746 23014617 ~ 23032420 (+)

Expression


Co-expression Network