G1716883


Basic Information

Item Value
gene id G1716883
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 21876304 ~ 21876625 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1967057
ggcaactgctccgcccacaaccgtaaggctctccagagggtagtgatgtctgcacaacgcatcaccgggggcaaactacctgccctccaggacacctacaccacccgatgtcacaggaaggccataaagatcatcaaggacaacaaccacccgagccactgcctgttcaccccgctatcatccagaaggcgaggtcagtacaggtgcatcaaagctgggaccgagagactgaaaaacagcttctatctcaaggccatcagactgttaaaaagccaccactaacattgagtggctgctgccaacacactgactcaactccagc

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1967057 True 322 lncRNA 0.54 1 21876304 21876625

Neighbor

gene id symbol gene type direction distance location
LOC110499997 LOC106576329 coding upstream 6559 21650654 ~ 21869745 (+)
LOC118942910 NA coding upstream 20356 21850946 ~ 21855948 (+)
LOC110499995 hcls1 coding upstream 284631 21582932 ~ 21591673 (+)
LOC110499994 LOC106609404 coding upstream 293491 21558541 ~ 21582813 (+)
LOC110499992 orc5 coding upstream 329799 21535960 ~ 21546505 (+)
LOC110499998 LOC106576327 coding downstream 43892 21920517 ~ 21948205 (+)
LOC100653451 LOC106609409 coding downstream 114593 21991218 ~ 22007807 (+)
LOC110500917 NA coding downstream 133341 22009966 ~ 22011099 (+)
LOC110501027 LOC106609383 coding downstream 241356 22117981 ~ 22119671 (+)
LOC110500003 LOC106609411 coding downstream 265067 22141692 ~ 22175639 (+)
G1716881 NA non-coding upstream 3965 21872120 ~ 21872339 (+)
G1716270 NA non-coding upstream 32592 21841281 ~ 21843712 (+)
G1716267 NA non-coding upstream 37244 21836200 ~ 21839060 (+)
G1716154 NA non-coding upstream 230444 21645628 ~ 21645860 (+)
G1716885 NA non-coding downstream 1249 21877874 ~ 21878169 (+)
G1716888 NA non-coding downstream 3365 21879990 ~ 21880232 (+)
G1716898 NA non-coding downstream 13893 21890518 ~ 21890814 (+)
G1716905 NA non-coding downstream 19253 21895878 ~ 21896108 (+)
G1716935 rps16 non-coding downstream 109635 21986260 ~ 21990776 (+)
LOC110499980 LOC106576426 other upstream 876167 20954576 ~ 21004439 (+)
G1715392 NA other upstream 1317553 20558422 ~ 20558751 (+)
nmes1 nmes1 other upstream 1762413 20109125 ~ 20113891 (+)
G1714090 NA other upstream 2252390 19384972 ~ 19754609 (+)
G1713384 NA other upstream 3138868 18734791 ~ 18737436 (+)
G1717161 LOC106576319 other downstream 299338 22175963 ~ 22180897 (+)
G1717516 NA other downstream 842294 22718919 ~ 22784445 (+)
G1717520 NA other downstream 944127 22820752 ~ 22879923 (+)
G1717517 NA other downstream 973267 22849892 ~ 22851407 (+)
LOC110500038 LOC106609436 other downstream 1138181 23014617 ~ 23032420 (+)

Expression


Co-expression Network