XLOC_000366 (metap1d)


Basic Information

Item Value
gene id XLOC_000366
gene name metap1d
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 30946231 ~ 30974165 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000627
GACCTCTTCTGTGGGAAACATGGCTGCGCCCTGTGCAGCTCAGTGCTTATACAGAACAGGTGGCTTAAGGCTGCTACAGAGAATTTCAAGGCTACCTCACTGCCACAAAGATGCATCTTTGGCCCACCAGTGCCAATTTCACCGATCTTTCTTCTGGAGGAAGCCAAAAACTTCCCACAGTGTAGTCCGGCCTGCCATAGTGCGCCCAGCTTATCCCGTACCCAAGCACATTCAGAGGCCTGACTACGTGTCATCCAGCAAAGTGCCTGAATGGCCAGATTACATTGAGATTAAAGATGAAGAGCAGATCCAGGGATTAAGACGAGCGTGTCAACTAGCCAGACACATACTGCTGCTGACAGGAAACAGTTTGAAGGTTGGTATGACGACAGATGAAATAGACTTTATAGTCCATCAAGAAGCGATTCGTCACAATGGCTACCCTTCTCCCTTACATTATGGGGGCTTTCCGAAGTCGGTCTGTACctctgtgaacaatgttgtatgtCACGGCATTCCAGACAGTCGGCCATTGCAGGATGGTGATATCATCAATATTGATGTCACAGTTTATCTGGAAGGTTACCATGGTGACACCTCAGAGACATTTCTGATTGGCTCAGTCAACGACCAGGGCAGGAAATTAGTGGATGTGGCTCGTCAATGCAGAGATCAAGCCATCGCCGCCTGTGGCCCGGGACAACCTTTGTGCGTCATTGGCAACATCATCAGCAATATAGCAAACTCAAATGGATTTCGTGTATGTCCATATTTTATTGGCCATGGGATCGGAGAATATTTCCATGGACATCCAGAGATATGGCATCATGctaATGACAATGACCTCAAGATGGAAGAAGGCATGTCCTTCACCATAGAACCTATTCTTATGGAGGGAACGTCAGAATTCAGGATCCTGAGTGACAAGTGGACTGCTGTGTCTGTGGACGACAAAAGGTCGGCACAGTTTGAACACACGGTTGTCATCACTAGCGATGGTGTAGAGATTCTGACTAAGCTACCTGAGGAAGATTGACAGGAATGACGGGACATCTTGTGACGTGTGAGATGGATCTGTTGTTtagaatttgctatttaaataaaattttctaaACTTTT
>TCONS_00000628
CAGTGCCAATTTCACCGATCTTTCTTCTGGAGGAAGCCAAAAACTTCCCACAGTGTAGTCCGGCCTGCCATAGTGCGCCCAGCTTATCCCGTACCCAAGCACATTCAGAGGCCTGACTACGTGTCATCCAGCAAAGTGCCTGAATGGCCAGATTACATTGAGATTAAAGATGAAGAGCAGATCCAGGGATTAAGACGAGCGTGTCAACTAGCCAGACACATACTGCTGCTGACAGGAAACAGTTTGAAGGTTGGTATGACGACAGATGAAATAGACTTTATAGTCCATCAAGAAGCGATTCGTCACAATGGCTACCCTTCTCCCTTACATTATGGGGGCTTTCCGAAGTCGGTCTGTACctctgtgaacaatgttgtatgtCACGGCATTCCAGACAGGTTTATCTGGAAGGTTACCATGGTGACACCTCAGAGACATTTCTGATTGGCTCAGTCAACGACCAGGGCAGGAAATTAGTGGATGTGGCTCGTCAATGCAGAGATCAAGCCATCGCCGCCTGTGGCCCGGGACAACCTTTGTGCGTCATTGGCAACATCATCAGCAATATAGCAAACTCAAATGGATTTCGTGTATGTCCATATTTTATTGG

Function

symbol description
metap1d Predicted to enable metal ion binding activity and metalloaminopeptidase activity. Predicted to be involved in protein initiator methionine removal. Predicted to act upstream of or within proteolysis. Predicted to be located in mitochondrion. Orthologous to human METAP1D (methionyl aminopeptidase type 1D, mitochondrial).

GO:

id name namespace
GO:0070084 protein initiator methionine removal biological_process
GO:0006508 proteolysis biological_process
GO:0005739 mitochondrion cellular_component
GO:0004177 aminopeptidase activity molecular_function
GO:0070006 metalloaminopeptidase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008235 metalloexopeptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-71 Predicted to enable metal ion binding activity and metalloaminopeptidase activity. Predicted to be involved in protein initiator methionine removal. Predicted to act upstream of or within proteolysis. Predicted to be located in mitochondrion. Orthologous to human METAP1D (methionyl aminopeptidase type 1D, mitochondrial).

Ensembl:

ensembl_id ENSDARG00000019715

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000627 False 1119 mRNA 0.46 10 30946231 30974165
TCONS_00000628 True 610 nonsense_mediated_decay 0.48 5 30955925 30965004

Neighbor

gene id symbol gene type direction distance location
XLOC_000365 BX548015.2 coding upstream 86707 30853969 ~ 30859524 (+)
XLOC_000364 bora coding upstream 210753 30723380 ~ 30735478 (+)
XLOC_000363 gpr183b coding upstream 391258 30551777 ~ 30554973 (+)
XLOC_000362 tmem41ab coding upstream 508195 30422143 ~ 30438036 (+)
XLOC_000361 BX255890.2 coding upstream 718726 30227391 ~ 30227505 (+)
XLOC_000367 itga6b coding downstream 45000 31019165 ~ 31064706 (+)
XLOC_000368 eef1a1l2 coding downstream 136652 31110817 ~ 31130222 (+)
XLOC_000369 NA coding downstream 166954 31141119 ~ 31144527 (+)
XLOC_000370 NA coding downstream 380420 31354585 ~ 31359319 (+)
XLOC_000371 CT573247.1 coding downstream 545074 31519239 ~ 31520972 (+)
XLOC_000360 dre-mir-740 non-coding upstream 780166 30165953 ~ 30166065 (+)
XLOC_000358 NA non-coding upstream 866702 30074635 ~ 30079529 (+)
XLOC_000350 CR774189.1 non-coding upstream 1437758 29507647 ~ 29508473 (+)
XLOC_000380 NA non-coding downstream 1036097 32010262 ~ 32011794 (+)
XLOC_000381 NA non-coding downstream 1037715 32011880 ~ 32012378 (+)

Expression


Co-expression Network