G1716935 (rps16)


Basic Information

Item Value
gene id G1716935
gene name rps16
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 21986260 ~ 21990776 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1967113
TTAACGGTAAGACTTCTGGTAGCGGGCACGGGCTCCTGGTCCACCAAACTTCTTGGACTCGCAGCGACGAGGATCGGCAACCAGCAGAGTCCTGTCGTACTGGATCAAGATGTCCTTAATCTCCTTCTTGGAGGCCTCATCCACATATTTCTGGTAGTATGCGACCAGGGCTTTGGAGATGGACTGACGGATAGCGTAGATCTGTGCTACATGTCCACCACCCTTCACTCGGACTCGGATGTCAACTCCAGCAAAACGCTCCTTGCCCAGCAGCAGCACTGGCTCCAGCAGCTTGTACTGGAGAGTGGCTGGCTCAATCATCTCGAGGGGTCTGCCGTTCACCTTGATGAGGCCATTCCCCCTCTTGCAGTGAGCAACAGCGGTGGCTGTTTTCTTTGCGTCCGAAAACCTGGACCGATTGCAGAGGACCTTTGGCCGGCATGTTTCTGAAACAATTAATCACAATGATTACCTTCAAAAATAATTAATATATCATATTTTTGCATTTGTAGCTGGGCTCAAGGGGGAACATACCCTCTTCAGCTTTAGTGCC
>TU1967114
TTAACGGTAAGACTTCTGGTAGCGGGCACGGGCTCCTGGTCCACCAAACTTCTTGGACTCGCAGCGACGAGGATCGGCAACCAGCAGAGTCCTGTCGTACTGGATCAAGATGTCCTTAATCTCCTTCTTGGAGGCCTCATCCACATATTTCTGGTAGTATGCGACCAGGGCTTTGGAGATGGACTGACGGATAGCGTAGATCTGTGCTACATGTCCACCACCCTTCACTCGGACTCGGATGTCAACTCCAGCAAAACGCTCCTTGCCCAGCAGCAGCACTGGCTCCAGCAGCTACAACAGAGAGGGAATTTGTCAAGGAAGCACACAGTCTATACATCCTGCAGACACACATTCAGCTAAATGTCTGGACACAACCAGACATTTAGCTGAATGAAGACCCATGTTGAATTTGGGCTTAGTAAACCAACAGCAGCTCTGTAAGAAGCCACGTTACACATCATGAAATAGTTAGCGACTGTTTCCTAAGGGACAGATTGGAATTTACCAGAGGGGGGCTGGTTCAACCCAAGGTGTCAGAATGCACAACCCTCATCAACAAAAATGTTTTCCTCACATGACCCTCCACTTGTACAGTCAAATAAATGGAAGCCCCTCAGAATTAACTCAATgttcacaaaaaataaaaaatagcaaCCCTG
>TU1967116
TTAACGGTAAGACTTCTGGTAGCGGGCACGGGCTCCTGGTCCACCAAACTTCTTGGACTCGCAGCGACGAGGATCGGCAACCAGCAGAGTCCTGTCGTACTGGATCAAGATGTCCTTAATCTCCTTCTTGGAGGCCTCATCCACATTTTCTGGTAGTATGCGACCAGGGCTTTGGAGATGGACTGACGGATAGCTGCAAGGAGAAGACGGCACAGCGTAAGACAAACAGCCATATTCAGTCAAGTACAGTTATTTCAAATCAAGACATCAGTTTCTACTGAGATGATCTGTCTAAACCGAAGTAGAGCAGCTTCCAGCTGTAAAAACAAGTCACCGTAGATCTGTGCTACATGTCCACCACCCTTCACTCGGACTCGGATGTCAACTCCAGCAAAACGCTCCTTGCCCAGCAGCAGCACTGGCTCCAGCAGCTTGTACTGGAGAGTGGCTGGCTCAATCATCTCGAGGGGTCTGCCGTTCACCTTGATGAGGCCATTCCCCCTCTTGCAGTGAGCAACAGCGGTGGCTGTTTTTTTGCGTCCGAAAACCTGGACCGATTGCAGAGGACCTTTGGCCGGCATGTTTCCTCTTCAGCTTTAGTGCC

Function

symbol description
rps16 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS16 (ribosomal protein S16).

NR:

description
PREDICTED: 40S ribosomal protein S16

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1967113 False 553 lncRNA 0.51 5 21986260 21990776
TU1967114 False 659 lncRNA 0.48 3 21986260 21987287
TU1967116 True 604 lncRNA 0.52 5 21986260 21990776

Neighbor

gene id symbol gene type direction distance location
LOC110499998 LOC106576327 coding upstream 38055 21920517 ~ 21948205 (+)
LOC110499997 LOC106576329 coding upstream 116515 21650654 ~ 21869745 (+)
LOC118942910 NA coding upstream 130312 21850946 ~ 21855948 (+)
LOC110499995 hcls1 coding upstream 394587 21582932 ~ 21591673 (+)
LOC110499994 LOC106609404 coding upstream 403447 21558541 ~ 21582813 (+)
LOC100653451 LOC106609409 coding downstream 442 21991218 ~ 22007807 (+)
LOC110500917 NA coding downstream 19190 22009966 ~ 22011099 (+)
LOC110501027 LOC106609383 coding downstream 127205 22117981 ~ 22119671 (+)
LOC110500003 LOC106609411 coding downstream 150916 22141692 ~ 22175639 (+)
LOC118943003 NA coding downstream 335951 22326727 ~ 22337006 (+)
G1716905 NA non-coding upstream 90152 21895878 ~ 21896108 (+)
G1716898 NA non-coding upstream 95446 21890518 ~ 21890814 (+)
G1716888 NA non-coding upstream 106028 21879990 ~ 21880232 (+)
G1716885 NA non-coding upstream 108091 21877874 ~ 21878169 (+)
G1716883 NA non-coding upstream 109635 21876304 ~ 21876625 (+)
G1716998 NA non-coding downstream 28551 22019327 ~ 22019604 (+)
G1717004 NA non-coding downstream 44721 22035497 ~ 22036125 (+)
G1717010 NA non-coding downstream 58459 22049235 ~ 22049439 (+)
G1717013 LOC106576321 non-coding downstream 62687 22053463 ~ 22054023 (+)
G1717015 NA non-coding downstream 64517 22055293 ~ 22055546 (+)
LOC110499980 LOC106576426 other upstream 986123 20954576 ~ 21004439 (+)
G1715392 NA other upstream 1427509 20558422 ~ 20558751 (+)
nmes1 nmes1 other upstream 1872369 20109125 ~ 20113891 (+)
G1714090 NA other upstream 2362346 19384972 ~ 19754609 (+)
G1713384 NA other upstream 3248824 18734791 ~ 18737436 (+)
G1717161 LOC106576319 other downstream 185187 22175963 ~ 22180897 (+)
G1717516 NA other downstream 728143 22718919 ~ 22784445 (+)
G1717520 NA other downstream 829976 22820752 ~ 22879923 (+)
G1717517 NA other downstream 859116 22849892 ~ 22851407 (+)
LOC110500038 LOC106609436 other downstream 1024030 23014617 ~ 23032420 (+)

Expression


Co-expression Network