G1717013 (LOC106576321)


Basic Information

Item Value
gene id G1717013
gene name LOC106576321
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 22053463 ~ 22054023 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1967202
GTGGTTGCAGCGTGAATGTCCTTCCACACCACTGCCTCCCTCGAGAGGTCGGAGAGCTCGAAGAGGTTGTCCACCACCACCTCGCCGATCATGTCGTGGCTGGTGAAGCGGTCAAAGTCGTAGACACTGAAGTGCAGTTTGCGGTTGCACAGCTGATCGTACTCCACGGGGAAGCAGAAGGCCTCGTCGAACGTGGGGTTGAGCGTCTTGCGGTGGACACGCGTCTGGaacttcttctgtctctctggcAGCAGGTAGATCTTGACGTAAGGGTCGGAGGTGCCAGTGAAGTCCTTGGCCGGCAGTTCCAGGGCTTTGAGGATCGTGACCACCAGCGCCTGTTCCTCGTAGTCGTAGAGCAGGGAGAAGCTCAGCTTACCGCACGTCTCCACCGGCTCCTGGGTCCCGTCCTCGGAGTCCACAGACTTCTGCTTGTAGAGCTCGGGCTTGATGCGGCCGATGCTTACGGTGGACGACTGGCGGATGGGGATCGTGTCCATGCTGAAGTCCACACTCGTCACGTTCATCTGGCGAGGCAGATGGCGGCGGAATGAATTGTGC

Function

NR:

description
synaptotagmin-10-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1967202 True 561 lncRNA 0.59 1 22053463 22054023

Neighbor

gene id symbol gene type direction distance location
LOC110500917 NA coding upstream 42364 22009966 ~ 22011099 (+)
LOC100653451 LOC106609409 coding upstream 45656 21991218 ~ 22007807 (+)
LOC110499998 LOC106576327 coding upstream 105258 21920517 ~ 21948205 (+)
LOC110499997 LOC106576329 coding upstream 183718 21650654 ~ 21869745 (+)
LOC110501027 LOC106609383 coding downstream 63958 22117981 ~ 22119671 (+)
LOC110500003 LOC106609411 coding downstream 87669 22141692 ~ 22175639 (+)
LOC118943003 NA coding downstream 272704 22326727 ~ 22337006 (+)
LOC110500014 LOC106576341 coding downstream 660103 22713864 ~ 22716877 (+)
LOC110500032 NA coding downstream 675168 22729191 ~ 22730990 (+)
G1717010 NA non-coding upstream 4024 22049235 ~ 22049439 (+)
G1717004 NA non-coding upstream 17338 22035497 ~ 22036125 (+)
G1716998 NA non-coding upstream 33859 22019327 ~ 22019604 (+)
G1716935 rps16 non-coding upstream 62687 21986260 ~ 21990776 (+)
G1716905 NA non-coding upstream 157355 21895878 ~ 21896108 (+)
G1717015 NA non-coding downstream 1270 22055293 ~ 22055546 (+)
G1717018 NA non-coding downstream 3692 22057715 ~ 22057928 (+)
G1717020 NA non-coding downstream 6015 22060038 ~ 22060237 (+)
G1717025 NA non-coding downstream 9380 22063403 ~ 22063900 (+)
G1717194 NA non-coding downstream 66827 22120850 ~ 22121061 (+)
LOC110499980 LOC106576426 other upstream 1053326 20954576 ~ 21004439 (+)
G1715392 NA other upstream 1494712 20558422 ~ 20558751 (+)
nmes1 nmes1 other upstream 1939572 20109125 ~ 20113891 (+)
G1714090 NA other upstream 2429549 19384972 ~ 19754609 (+)
G1713384 NA other upstream 3316027 18734791 ~ 18737436 (+)
G1717161 LOC106576319 other downstream 121940 22175963 ~ 22180897 (+)
G1717516 NA other downstream 664896 22718919 ~ 22784445 (+)
G1717520 NA other downstream 766729 22820752 ~ 22879923 (+)
G1717517 NA other downstream 795869 22849892 ~ 22851407 (+)
LOC110500038 LOC106609436 other downstream 960783 23014617 ~ 23032420 (+)

Expression


Co-expression Network