G1717025


Basic Information

Item Value
gene id G1717025
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 22063403 ~ 22063900 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1967214
GCGCTTCAAGGGGAAAGTTGAGTAGGCTGAAGTTGAACTTAACACGCATTTTACTGTTCAACTCATCATTCTCACACTACCTTGGGCACCTGGTTGACGCCAGAGAAACCAAACCATGACACAATAGAAGGATGCAAGCTTTAAGGAGAGGGATAGGAAGAAAACGTTGCTTTTGACCTATTTACCTGCGCTCCCTTTACCTTGTATGTTGCTCTCCAAGGGAAATATAGCCGAGCATTTCTCCCCATCTACATGCCCCGCTAGACAGAGCTCCGTGACGATCTGAAGGGCCCTTTGGCACAAGCTGAAGTTGTCCTCCGTTCGGACACTCATGTCTCTTCTGTTAAGCCATTGCACGCTGGAGGAGCCGGGAGGGCGGTGATTCATTTGGCCACCTTGCGCGCCGCTGAGTGCAGCCTCTTCGCGCCAAAGATCAGAGCGCACGAGGCGTCCACATCCATATCCACTGCGCAATGCCGGGACTGATTTACAGCGCGC

Function

NR:

description
synaptotagmin-10-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1967214 True 498 lncRNA 0.52 1 22063403 22063900

Neighbor

gene id symbol gene type direction distance location
LOC110500917 NA coding upstream 52304 22009966 ~ 22011099 (+)
LOC100653451 LOC106609409 coding upstream 55596 21991218 ~ 22007807 (+)
LOC110499998 LOC106576327 coding upstream 115198 21920517 ~ 21948205 (+)
LOC110499997 LOC106576329 coding upstream 193658 21650654 ~ 21869745 (+)
LOC110501027 LOC106609383 coding downstream 54081 22117981 ~ 22119671 (+)
LOC110500003 LOC106609411 coding downstream 77792 22141692 ~ 22175639 (+)
LOC118943003 NA coding downstream 262827 22326727 ~ 22337006 (+)
LOC110500014 LOC106576341 coding downstream 650226 22713864 ~ 22716877 (+)
LOC110500032 NA coding downstream 665291 22729191 ~ 22730990 (+)
G1717020 NA non-coding upstream 3166 22060038 ~ 22060237 (+)
G1717018 NA non-coding upstream 5475 22057715 ~ 22057928 (+)
G1717015 NA non-coding upstream 7857 22055293 ~ 22055546 (+)
G1717013 LOC106576321 non-coding upstream 9380 22053463 ~ 22054023 (+)
G1717010 NA non-coding upstream 13964 22049235 ~ 22049439 (+)
G1717194 NA non-coding downstream 56950 22120850 ~ 22121061 (+)
G1717195 NA non-coding downstream 57755 22121655 ~ 22122083 (+)
G1717199 NA non-coding downstream 62412 22126312 ~ 22126643 (+)
G1717204 NA non-coding downstream 71765 22135665 ~ 22135929 (+)
G1717212 NA non-coding downstream 120517 22184417 ~ 22184659 (+)
LOC110499980 LOC106576426 other upstream 1063266 20954576 ~ 21004439 (+)
G1715392 NA other upstream 1504652 20558422 ~ 20558751 (+)
nmes1 nmes1 other upstream 1949512 20109125 ~ 20113891 (+)
G1714090 NA other upstream 2439489 19384972 ~ 19754609 (+)
G1713384 NA other upstream 3325967 18734791 ~ 18737436 (+)
G1717161 LOC106576319 other downstream 112063 22175963 ~ 22180897 (+)
G1717516 NA other downstream 655019 22718919 ~ 22784445 (+)
G1717520 NA other downstream 756852 22820752 ~ 22879923 (+)
G1717517 NA other downstream 785992 22849892 ~ 22851407 (+)
LOC110500038 LOC106609436 other downstream 950906 23014617 ~ 23032420 (+)

Expression


Co-expression Network