G1717161 (LOC106576319)


Basic Information

Item Value
gene id G1717161
gene name LOC106576319
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 22175963 ~ 22180897 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1967360
TTgcatttgtattttattgatcTCAATATAACATGTTGCATAATGAAACCATATTTCAAGTGCTGTAAAGACATTTAAGCACAAAGACTCCAGTAACAGCTTCAAGATATCCTCCCTTTAGTCACTTTCTGCAACAATATGGAATAAGTACATCAATGTGCAAAGTTATACATTACACTTCAGGGAATAGTTTGCAGTGGAAGCAACTGAGCAGTATTATGGTCATGTCTTCAGCTGTGCATACAAATAAGTATTGCTAAGGCACTCAAGtaaaattatactgaacaaaaacatgcaAAGTGGTTTCATGAGCAGAAATGTTCCAGTTGCACAAAGCTTATTTTcattctgtaaaaaaaaagtgtttacttccctgttagtgagaatttctcctaagtgcaccttgtgctggggacacaaAAGCCAGGAGTATTTGTCTaacaaagcccttttgtggagaaaaactcattctgattggctcccAAAAAGTAGGCCtatgtcatgtgaaatccatagactagggcctaattcatttaacTTAAGAGTTTAGGAGGAAATCAgttgtttatattttgttcagtacacAGGTATCAGTCACAATTAGTTTGACAGGAAGAACATTCAAATAATTGTTTCCTCCAACTACCAGTTACTCAATTCAGAATGAAATCAGAAAATGCTTTAGACACCACTCATTTCAGGATTCTGTTTTGGAAATTAAGGCACACCAAATTACAGAAAATGGTCCACTAATTCTGCTGTAGGATAAGTGAAATGATTTCAACAGATGATCAAGCGCTGATGCAAGAGTTTTAATAAATGTTGGGTGTGGCTGATCATTGAGCCCCTTTAACCCCTCGCCTGGGATGGCTTCTAAAAGGTGAACCTCCGGCTGCTGGCGTGGCCCACTTTGTCCAGGTTGGGGTTACAGGCAAACTGGATCATGGGAGGCGGTCCGCACAGGAGGATGAGAGTGTCGTCTCCAGGGGGTGGAAGGTGGTCCCTCACCATGTCTTCACTGATGAAGCCTTGGCTGTACTCCCACTCCTCAGGAGCCCTGTCCAGGGTGAACCATAGCTTGAACCGGGTTGGGTGATTCGCTGCGATCTCCTCCAACTCCGGTCGAAGCAAGATGTCTTTCTCAGTCTGGTTGGCGAAGAGCAGATGACACACTGTCTGGTCCTGGGGATCCTTCATTATAGCTGTGATGAGCTGCAGCATGGGAGTGATTCcagtccctcctgcgATCATGCCCACTTGCTTGGCAGTTTTGATCACAGGCTCCGCCTTTTTTTCTGCCTTGATGGCAAAAGCCCCGTTTCCTTGGTAGACCAGCAGGCCGCTGGGCCCTCTGAAATCAATAGTGTCGCCAATCCGGAGGCTCTCCAAGTACTGACTCATCTTCCCACCTTCAGGAAACTTTGGATTAACGTTCTTGTAGTAAATCTTCACTACCAGGTCTACGAAGCCTAAGTCGTCATCACTAGACACAGGTGTGTACGGTCTGACCACCAGGACTCCATCCAGTTTGGCAGACAGGTATATGTGTTGCCCAATGGGTAGCCCAAGGACATGATCCTTTTCCCGCAGGGCAAAACGGAATTTCCTTGTGTCATGACTGATGATCTCTTTATCTATCAGCTTTAATGCATATTTGATGTTGGGGTCCTCTAGGGTGATGGCAGGTTTCTTCTTTGAGAGGAAGAGGCTCACGATGAGGTTGATAATGTTGTCAATACTGCTCCGAATGAGCCCAATGATGTAAGACAGCATCTTGTTTTTAACACCTTACAAGGCAACAGCGAAAAGTCTGTTCTCCGAGGAAAAACCGTCGCGCTGTCAAAGTACTGACTCCGGGGCTTTCAAGGCAACTAGGAACTCGGaaaaaatacgaggtcaaatcatgacgtcggTGATCGGAAAGTTGGAGTTCTAGGAGAGGCCCGAATTCacgagttggaattccgagttggatgacctttcAAAACGATGTTTCGCACTCTGAGTTTTTTTTCTCGCAAATTCACAgctgtcttgaacgcactgaagtcgtaCATCAGATATTTTTGAGTtcaca

Function

NR:

description
NADH-cytochrome b5 reductase 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1967360 True 2077 TUCP 0.44 9 22175963 22180897

Neighbor

gene id symbol gene type direction distance location
LOC110500003 LOC106609411 coding upstream 324 22141692 ~ 22175639 (+)
LOC110501027 LOC106609383 coding upstream 56292 22117981 ~ 22119671 (+)
LOC110500917 NA coding upstream 164864 22009966 ~ 22011099 (+)
LOC100653451 LOC106609409 coding upstream 168156 21991218 ~ 22007807 (+)
LOC110499998 LOC106576327 coding upstream 227758 21920517 ~ 21948205 (+)
LOC118943003 NA coding downstream 145830 22326727 ~ 22337006 (+)
LOC110500014 LOC106576341 coding downstream 533229 22713864 ~ 22716877 (+)
LOC110500032 NA coding downstream 548294 22729191 ~ 22730990 (+)
LOC110500034 LOC106609434 coding downstream 713861 22894758 ~ 22914536 (+)
LOC110501029 LOC106609386 coding downstream 733934 22914831 ~ 22920359 (+)
G1717204 NA non-coding upstream 40034 22135665 ~ 22135929 (+)
G1717199 NA non-coding upstream 49320 22126312 ~ 22126643 (+)
G1717195 NA non-coding upstream 53880 22121655 ~ 22122083 (+)
G1717194 NA non-coding upstream 54902 22120850 ~ 22121061 (+)
G1717025 NA non-coding upstream 112063 22063403 ~ 22063900 (+)
G1717212 NA non-coding downstream 3520 22184417 ~ 22184659 (+)
G1717218 NA non-coding downstream 9543 22190440 ~ 22190541 (+)
G1717217 NA non-coding downstream 9903 22190800 ~ 22191215 (+)
G1717246 NA non-coding downstream 55964 22236861 ~ 22270892 (+)
G1717364 NA non-coding downstream 241234 22422131 ~ 22422412 (+)
LOC110499980 LOC106576426 other upstream 1175826 20954576 ~ 21004439 (+)
G1715392 NA other upstream 1617212 20558422 ~ 20558751 (+)
nmes1 nmes1 other upstream 2062072 20109125 ~ 20113891 (+)
G1714090 NA other upstream 2552049 19384972 ~ 19754609 (+)
G1713384 NA other upstream 3438527 18734791 ~ 18737436 (+)
G1717516 NA other downstream 538022 22718919 ~ 22784445 (+)
G1717520 NA other downstream 639855 22820752 ~ 22879923 (+)
G1717517 NA other downstream 668995 22849892 ~ 22851407 (+)
LOC110500038 LOC106609436 other downstream 833909 23014617 ~ 23032420 (+)
ruxf LOC105021811 other downstream 918118 23098972 ~ 23100823 (+)

Expression


Co-expression Network