G1717655


Basic Information

Item Value
gene id G1717655
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 22983213 ~ 22984900 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1967890
tcaaggggtatgaatactttctgaaggcactgtacatatgcagAATTATCTTATTCAGAGGAAGAAAGGAGCTGAGTAAACCCACAGAGAGTGAACGTTGGAGTTGTGGGTAAATATGAGTCATATTTTGAAATACTCTTATCTCCCTCAACACAGTGCTTTGATCACTGAGCTCAAAGCAGAAATAAGACAGCCGAGGAAGACTTCTTAATCAGTGTCAAActtaaacacacacgcacacacactcgcgcctcaaacacacacacacac
>TU1967889
GGGTAAATATGAGTCATATTTTGAAATACTCTTATCTCCCTCAACACAGTGCTTTGATCACTGAGCTCAAAGCAGAAATAAGACAGCCGAGGAAGACTTCTTAATCAGTGTCAAActtaaacacacacgcacacacactcgcgcctcaaacacacacacacacatgcaaagaaTCCACACCCACAAAGAAATGCCTGCACCCACACATCAATCAGCACTATGCAATAAAATAACTCAGTGACAGTAATCTGAGGCTGAAAGATGTATTAACTCCCTCATCCCTTGATGTCTCAAAGCATGAAATTAGGCCAAGATGCAAAGTCACTTTCAGAGGTTTTATTAAAAAGTGGTGCCTGACAGTTCTGCAGAAATATTATTTACAGACGAGACACGATGGCTCTCTAGTGATTGTGTTTAAGAATGGCGGGACATTTAGTCACTGTAAAATATGATCTGTTTTGAGTTATCCCTAATGCTTCTCTGCGTTATAAACTTCATTTCCCATAAGGCCAACTGCCACAATGGTGTAGTAGTGCAACCTGATTAGTACATTTGAAGTACTAAATGTAAACTCGAAACAATTTTCAATTTAAATACATAATGGATATTTACACTGTTAAATGTCAGATGGGCCGGCCAAAGTAGTCACTGTGATAATATAATATCCTAATTCAAATGAATAATTAATGAAACAATGCACCACATAATGAAATAACGTTTTCTGTATCTATATTATTACAAGATAATTGAGCATATTTAAGGCACTGTCTGGATGTTGCTTTATTGCTAGTGAGCAATTCCTAAGGGATACATTTCATTCTCCATTCCATGTCTAGCTCAAAAGACAAACATTCTTTTGTAATCTGTCCACTTTAAattattcaataaaaaaaattatacaaatgaGGCCTGGATTAAAAGATTCCTCCTAATGAATCCAACAAGTCTGTTGTGGCAGTTTAAAACAAACTAGTGAGGCATTGTTACAACACGTGCTTTTACAACCATCATGGCATACAATACAAAAGGTAGCTACTACTTATTACAAAAGTGACAAAGATAGTATCCGTTATCAAATAAATCATATTTCTAAAATCACATAATTATGGACATTGAGAAATGTACAGTTCTATATAAATATTTTCTCTTGACTTTTAGGGGAAAAAAAAGGTATATTTTACTCTCCCAATTCTACATATTACCCAAGCACCGCTTCTGATTCTAGCATATACTCTTTAAAAATGCATTTGTTCTATAGGCTGTGTAGTAAAATATTGACATTATGCCATTTCCAGTTTTATCCAGTATACTGCATTATACATGTGGTAGATGTACTGAGTTAAGCCTAACAGAGAATAACAATATAAACCAACCCCTGTAATTTTGCTATATTTCTAAGGAGCAAAATGCTCACCTCCTGTGTCTCTGTGGCACCCTGTTTTTTCACAGTTCAATCCAACCACTGGCAGTGCACCAGAGAAGCTTCCCTACTCAGAGAGAACCCACTGCTTTCTCACCCTTCTTTGTAACTGGTATCCATCCCATCATGCAAGGTTCCCACTCTAATCATCATTCCAATTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1967890 False 270 lncRNA 0.42 1 22983213 22983482
TU1967889 True 1581 lncRNA 0.36 1 22983320 22984900

Neighbor

gene id symbol gene type direction distance location
LOC110501029 LOC106609386 coding upstream 62854 22914831 ~ 22920359 (+)
LOC110500034 LOC106609434 coding upstream 68677 22894758 ~ 22914536 (+)
LOC110500032 NA coding upstream 252223 22729191 ~ 22730990 (+)
LOC110500014 LOC106576341 coding upstream 266336 22713864 ~ 22716877 (+)
LOC118943003 NA coding upstream 646207 22326727 ~ 22337006 (+)
LOC110500038 LOC106609436 coding downstream 29717 23014617 ~ 23032420 (+)
LOC110500039 LOC100194705 coding downstream 48825 23033725 ~ 23040825 (+)
ruxf LOC105021811 coding downstream 114072 23098972 ~ 23100823 (+)
amdhd1 amdhd1 coding downstream 116078 23100978 ~ 23105006 (+)
klhl42 LOC106609448 coding downstream 172183 23157083 ~ 23160673 (+)
G1717652 nduac non-coding upstream 1747 22980144 ~ 22981466 (+)
G1717653 NA non-coding upstream 3618 22979500 ~ 22979595 (+)
G1717650 NA non-coding upstream 8896 22974080 ~ 22974317 (+)
G1717649 NA non-coding upstream 9199 22973809 ~ 22974014 (+)
G1717642 NA non-coding upstream 20515 22957675 ~ 22962698 (+)
G1717688 NA non-coding downstream 123290 23108190 ~ 23108436 (+)
G1717689 NA non-coding downstream 136984 23121884 ~ 23131706 (+)
G1717720 NA non-coding downstream 148332 23133232 ~ 23134409 (+)
G1717725 LOC106609435 non-coding downstream 161857 23146757 ~ 23147769 (+)
G1717520 NA other upstream 103290 22820752 ~ 22879923 (+)
G1717517 NA other upstream 131806 22849892 ~ 22851407 (+)
G1717516 NA other upstream 198768 22718919 ~ 22784445 (+)
G1717161 LOC106576319 other upstream 802316 22175963 ~ 22180897 (+)
LOC110499980 LOC106576426 other upstream 1983076 20954576 ~ 21004439 (+)
G1717785 NA other downstream 271226 23256126 ~ 23256812 (+)
G1719225 NA other downstream 1088505 24073405 ~ 24074448 (+)
G1719268 NA other downstream 1150864 24135764 ~ 24136323 (+)

Expression


Co-expression Network