G1717730 (LOC106576289)


Basic Information

Item Value
gene id G1717730
gene name LOC106576289
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 23161606 ~ 23162406 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1967993
TCCTCTCTTTCTAAACTATTATCTTCTAACATTTTGGAGGTGGTACTAGCTTCCTCTGTTCCTGAAGGATCTTTTGCCTTGAGGATGTCCACATCGACAGAGAAGACAAACTGCTCGTAAGCAGTGTAATCGAGGATATTACAACTTCCCAGTATATCAGTTGCATCGTCAGTCTGTCTGATTGGGGAGAAAGCCCTTATAAACTCCAGGCCTCTGTAGTTCACAGAGGTCCACTCCTTCCCTGGGAAGTCTGTCACAGAGGAATCAGTCAGTGTTACTGCTGCTCTCGCTATCCCCTTGAGAGCTATGGAACTGGTCCTCAGGAAGAGACATCTTGGTCAGGGGAATAGTCTCTCTGGAACATTCCACTATCTCATGTCTGCTTTCTGGGATCCAGGTTTGGTCTAGCTGGAGAGCTATAGTCCAGGAGTAGAGGGTCTGTCTGAAGGTGGAGGAGACCCGGGGCATAAGGATGGCATGTGAGATGGTAGTGGAGGTCTGGGATGCTGAGGGCCACACACTGCAGGTTCTGCTGTGTCAGAGGCTTCTCTGCTGTATTGGTCAGTCGCACAGTCATGTTTGTTGGGTAGGAGTATGTTTTTACTTCATGAAATCTGCCCAATCATGAAACAAAGAATGGAATTATGAAATTGTTTGAAATAACTCTGACAGAAAAATAATAAATTGGTGGCTATTTCACAATttacataaaacatttttttatacctAAATTGAAAGCAGGATTGTCTTCTGCATAGAATGTCAGCCTCATAAGATATTT

Function

NR:

description
PREDICTED: uncharacterized protein LOC106576289

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1967993 True 781 lncRNA 0.44 2 23161606 23162406

Neighbor

gene id symbol gene type direction distance location
klhl42 LOC106609448 coding upstream 933 23157083 ~ 23160673 (+)
amdhd1 amdhd1 coding upstream 56600 23100978 ~ 23105006 (+)
ruxf LOC105021811 coding upstream 60783 23098972 ~ 23100823 (+)
LOC110500039 LOC100194705 coding upstream 120781 23033725 ~ 23040825 (+)
LOC110500038 LOC106609436 coding upstream 129186 23014617 ~ 23032420 (+)
LOC110500046 LOC106609461 coding downstream 1699 23164105 ~ 23189656 (+)
ascl1a LOC106576285 coding downstream 56538 23218944 ~ 23220765 (+)
LOC110500049 LOC106576281 coding downstream 133377 23295783 ~ 23313876 (+)
th2 LOC106609447 coding downstream 151929 23314335 ~ 23327014 (+)
LOC110500052 NA coding downstream 178782 23341188 ~ 23353769 (+)
G1717725 LOC106609435 non-coding upstream 13837 23146757 ~ 23147769 (+)
G1717720 NA non-coding upstream 27197 23133232 ~ 23134409 (+)
G1717689 NA non-coding upstream 29900 23121884 ~ 23131706 (+)
G1717688 NA non-coding upstream 53170 23108190 ~ 23108436 (+)
G1717680 NA non-coding downstream 17139 23179545 ~ 23184074 (+)
G1717749 NA non-coding downstream 35632 23198038 ~ 23209398 (+)
G1717748 NA non-coding downstream 36322 23198728 ~ 23199596 (+)
G1717786 NA non-coding downstream 94976 23257382 ~ 23257585 (+)
G1717787 NA non-coding downstream 95431 23257837 ~ 23258062 (+)
G1717520 NA other upstream 281683 22820752 ~ 22879923 (+)
G1717517 NA other upstream 310199 22849892 ~ 22851407 (+)
G1717516 NA other upstream 377161 22718919 ~ 22784445 (+)
G1717785 NA other downstream 93720 23256126 ~ 23256812 (+)
G1719225 NA other downstream 910999 24073405 ~ 24074448 (+)
G1719268 NA other downstream 973358 24135764 ~ 24136323 (+)
adm2a LOC106609361 other downstream 1115425 24277797 ~ 24294858 (+)
LOC110500097 LOC106576231 other downstream 1154232 24315919 ~ 24321712 (+)

Expression


Co-expression Network